On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
922.3
nTPM
HPA Brain:
579.2
nTPM
GTEx:
922.3
nTPM
FANTOM5:
1.8
Scaled Tags Per Million
Mouse:
139.2
nTPM
Rat:
1.2
nTPM
Pig:
122.2
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
20964
Sample
Intensity
Spinal cord_01
31749
Spinal cord_02
24369
Spinal cord_03
16243
Spinal cord_04
30712
Spinal cord_05
15895
Spinal cord_06
17559
Spinal cord_07
14340
Spinal cord_08
28806
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
579.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 477.7
2734
Male, age 80, both hemispheres
534.7
2819
Male, age 47, both hemispheres
491.7
2193
Male, age 75, both hemispheres
452.6
2818
Female, age 79, both hemispheres
431.9
Cervical spinal cord, central gray nTPM: 435.4
2565
Male, age 75, midline
609.5
1981
Female, age 72, midline
533.9
2194
Female, age 79, both hemispheres
360.7
2816
Male, age 47, midline
353.8
2048
Male, age 55, midline
319.1
Cervical spinal cord, dorsal horn nTPM: 478.6
2173
Female, age 72, unknown
587.6
2069
Male, age 47, both hemispheres
582.5
2296
Male, age 66, both hemispheres
503.3
1877
Male, age 55, unknown
463.5
2297
Male, age 75, both hemispheres
395.4
2721
Male, age 90, both hemispheres
339.6
Cervical spinal cord, ventral horn nTPM: 579.2
2480
Male, age 75, both hemispheres
760.5
2809
Male, age 90, both hemispheres
735.6
2098
Female, age 72, unknown
656.5
2295
Male, age 66, both hemispheres
533.9
2068
Male, age 55, unknown
503.9
2820
Female, age 79, both hemispheres
284.7
Dorsal funiculus (white matter) nTPM: 421.4
2810
Male, age 90, both hemispheres
451.1
2064
Female, age 79, both hemispheres
439.0
2812
Male, age 66, both hemispheres
416.1
2128
Male, age 75, both hemispheres
409.5
2817
Male, age 47, both hemispheres
391.1
Lateral funiculus (white matter) nTPM: 493.8
2094
Female, age 79, both hemispheres
521.6
2192
Male, age 75, both hemispheres
495.4
2294
Male, age 66, both hemispheres
481.0
2099
Male, age 90, both hemispheres
477.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
922.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 922.3
Samples: 204
Max nTPM: 2492.5
Min nTPM: 394.6
Std nTPM: 290.3
Median nTPM: 875.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2492.5
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1976.9
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1657.3
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1656.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1623.0
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1613.0
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1540.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1526.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1520.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1483.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1420.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1383.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1362.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1335.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1328.6
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1295.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1295.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1291.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1283.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1275.2
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1270.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1267.8
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1257.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1254.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1239.9
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1239.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1233.5
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1228.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1224.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1224.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1219.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1217.8
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1198.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1194.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1179.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1170.6
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1170.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1168.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1168.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1162.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1157.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1156.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1154.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1135.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1123.4
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1108.8
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1108.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1107.4
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1105.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1105.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1102.0
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1085.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1082.4
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1080.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1076.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1072.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1071.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1047.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1044.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1031.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1031.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1028.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1021.1
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1018.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1012.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1010.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1001.2
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
979.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
976.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
975.5
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
972.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
971.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
970.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
965.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
964.1
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
953.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
950.5
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
949.5
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
948.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
936.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
935.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
932.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
930.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
925.5
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
923.6
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
919.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
914.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
909.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
909.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
908.8
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
906.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
903.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
900.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
897.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
894.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
892.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
888.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
883.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
881.8
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
878.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
878.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
876.2
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
875.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
872.3
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
868.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
866.2
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
859.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
857.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
854.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
852.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
849.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
846.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
837.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
837.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
835.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
833.8
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
833.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
833.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
832.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
822.8
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
822.3
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
812.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
804.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
804.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
802.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
800.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
797.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
795.4
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
791.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
788.3
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
786.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
786.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
786.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
785.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
780.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
779.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
775.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
771.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
770.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
765.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
760.6
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
758.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
758.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
749.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
742.1
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
738.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
736.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
735.9
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
734.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
725.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
719.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
717.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
715.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
715.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
714.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
710.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
708.6
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
701.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
697.5
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
692.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
692.2
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
691.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
691.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
690.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
683.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
679.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
670.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
662.4
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
662.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
657.8
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
656.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
652.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
652.8
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
642.3
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
640.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
636.3
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
633.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
631.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
631.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
625.1
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
619.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
618.0
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
615.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
606.7
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
606.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
600.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
600.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
595.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
595.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
595.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
568.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
556.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
554.7
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
546.9
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
543.7
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
535.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
535.0
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
508.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
505.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
493.5
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
488.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
473.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
456.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
394.6
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
122.2
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 122.2
Samples: 4
Max nTPM: 167.2
Min nTPM: 94.7
Sample A
Female
94.7
Sample B
Female
122.2
Sample C
Male
167.2
Sample D
Male
104.6
Ventral spinal cord nTPM: 114.5
Samples: 4
Max nTPM: 127.9
Min nTPM: 96.3
Sample A
Female
96.3
Sample B
Female
122.4
Sample C
Male
127.9
Sample D
Male
111.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 139.2
Samples: 4
Max nTPM: 176.7
Min nTPM: 99.3
Sample A
176.7
Sample B
99.3
Sample C
113.3
Sample D
167.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 1.3
Samples: 4
Max nTPM: 2.8
Min nTPM: 0.3
Sample A
2.8
Sample A
1.5
Sample A
0.3
Sample A
0.4
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The Human Protein Atlas project is funded
