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  • GSK3A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:61.6 nTPM
HPA Brain:90.1 nTPM
GTEx:61.6 nTPM
FANTOM5:80.3 Scaled Tags Per Million
Pig:86.3 nTPM
Mouse:181.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.1
Sample id Sample description nTPM
Amygdala
nTPM: 71.5
2814 Male, age 76, right hemisphere 95.9
2517 Female, age 94, left hemisphere 67.9
2514 Male, age 75, right hemisphere 67.5
2695 Female, age 67, right hemisphere 66.3
1987 Female, age 91, left hemisphere 60.0
Basal amygdala
nTPM: 90.1
2243 Female, age 91, right hemisphere 121.7
2685 Female, age 94, left hemisphere 104.7
1955 Male, age 76, both hemispheres 90.2
2827 Female, age 67, right hemisphere 83.2
2609 Male, age 75, right hemisphere 71.3
2110 Male, age 80, left hemisphere 69.7
Central amygdala
nTPM: 84.5
2239 Male, age 80, left hemisphere 101.4
1905 Male, age 76, both hemispheres 96.9
2826 Female, age 94, left hemisphere 84.0
2701 Female, age 91, right hemisphere 78.5
2515 Male, age 75, right hemisphere 61.9
Corticomedial amygdala
nTPM: 84.0
2535 Female, age 67, right hemisphere 103.2
2242 Female, age 91, right hemisphere 94.0
2240 Male, age 76, both hemispheres 87.6
2829 Male, age 80, left hemisphere 86.8
2429 Female, age 94, left hemisphere 74.7
2428 Male, age 75, right hemisphere 57.5
Lateral amygdala
nTPM: 78.5
2534 Female, age 94, left hemisphere 93.1
1883 Male, age 76, both hemispheres 92.6
2256 Male, age 80, left hemisphere 81.6
2255 Female, age 91, right hemisphere 80.5
2830 Female, age 67, right hemisphere 63.3
2516 Male, age 75, right hemisphere 59.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 61.6
Samples: 181

Max nTPM: 125.1
Min nTPM: 26.1
Std nTPM: 18.8
Median nTPM: 60.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 125.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 124.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 119.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 111.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 97.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 96.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 94.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 90.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 90.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 88.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 86.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 85.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 85.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 84.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 84.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 84.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 83.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 83.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 83.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 82.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 82.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 82.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 81.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 80.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 80.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 80.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 79.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 77.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 77.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 76.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 75.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 75.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 75.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 73.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 73.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 72.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 72.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 70.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 69.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 69.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 68.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 68.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 67.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 67.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 66.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 66.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 66.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 66.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 65.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 65.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 65.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 64.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 64.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 64.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 63.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 63.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 63.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 62.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 62.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 62.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 62.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 61.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 61.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 61.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 61.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 61.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 60.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 60.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 59.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 58.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 58.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 58.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 57.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 57.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 56.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 55.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 55.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 55.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 54.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 54.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 54.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 54.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 54.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 54.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 54.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 53.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 53.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 51.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 51.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 49.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 49.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 49.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 49.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 49.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 49.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 48.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 48.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 48.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 48.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 48.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 48.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 47.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 47.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 46.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 46.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 46.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 46.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 46.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 45.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 44.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 44.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 44.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 43.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 43.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 42.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 41.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 41.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 40.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 40.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 39.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 38.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 38.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 37.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 37.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 37.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 37.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 36.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 35.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 35.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 33.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 33.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 32.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 31.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 31.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 26.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 80.3
FF:10151-102I7 76 years, female 80.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.3
Pig sample Sample description nTPM
Amygdala
nTPM: 86.4
Samples: 4

Max nTPM: 114.4
Min nTPM: 66.8
Sample A Female 114.4
Sample B Female 66.8
Sample C Male 81.3
Sample D Male 82.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 181.2
Samples: 4

Max nTPM: 201.8
Min nTPM: 169.3
Sample A Male 174.4
Sample B Male 179.4
Sample C Female 201.8
Sample D Female 169.3

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