MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.1 nTPM
HPA Brain:78.1 nTPM
GTEx:43.1 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:113.7 nTPM
Mouse:127.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.0
2666 Male, age 74, left hemisphere 87.2
2219 Male, age 76, both hemispheres 75.2
1827 Male, age 72, unknown 75.1
2019 Male, age 18, unknown 74.0
2586 Male, age 75, left hemisphere 72.2
2828 Female, age 72, unknown 70.6
1870 Female, age 42, unknown 67.7
1833 Male, age 53, unknown 59.1
2411 Female, age 72, unknown 55.1
1830 Male, age 51, unknown 54.1
Dorsal raphe nucleus
nTPM: 51.8
2750 Male, age 76, both hemispheres 57.2
1828 Male, age 53, unknown 56.4
2047 Male, age 72, unknown 52.2
2298 Female, age 72, unknown 46.8
2016 Female, age 72, unknown 46.5
Inferior colliculus
nTPM: 63.8
2849 Male, age 72, unknown 72.4
1890 Male, age 53, unknown 63.9
2097 Female, age 72, unknown 59.6
1848 Female, age 42, unknown 59.4
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Periaquaductal grey, anterior
nTPM: 71.3
2502 Female, age 75, unknown 73.0
1795 Male, age 51, unknown 71.1
1947 Male, age 18, unknown 69.9
Periaquaductal grey, dorsal
nTPM: 56.8
2850 Male, age 76, both hemispheres 66.6
1831 Male, age 72, unknown 58.0
2464 Female, age 72, unknown 51.8
1840 Male, age 53, unknown 50.8
Periaquaductal grey, lateral
nTPM: 53.8
2140 Male, age 76, both hemispheres 56.2
2053 Male, age 18, unknown 54.8
2272 Male, age 74, both hemispheres 50.6
Pretectal area
nTPM: 78.1
1816 Male, age 51, unknown 112.0
1817 Female, age 42, unknown 100.7
2007 Male, age 72, unknown 96.3
1944 Female, age 72, unknown 92.2
1815 Male, age 53, unknown 86.4
2667 Female, age 75, unknown 80.5
2407 Male, age 75, both hemispheres 74.6
2825 Male, age 18, unknown 59.9
2316 Male, age 76, right hemisphere 56.8
2224 Female, age 72, unknown 52.9
2273 Male, age 74, both hemispheres 47.0
Red nucleus
nTPM: 64.8
2785 Male, age 18, unknown 79.4
2584 Male, age 75, left hemisphere 69.4
2588 Male, age 74, left hemisphere 67.8
2823 Male, age 76, right hemisphere 65.8
1865 Male, age 51, unknown 65.1
1821 Female, age 72, unknown 63.8
2725 Female, age 75, unknown 62.8
1904 Male, age 53, unknown 62.6
2503 Female, age 72, unknown 62.2
1954 Female, age 42, unknown 60.4
2227 Male, age 72, unknown 60.0
2769 Male, age 72, unknown 57.8
Substantia nigra
nTPM: 65.7
2665 Male, age 74, both hemispheres 79.6
1889 Female, age 72, unknown 79.1
1916 Female, age 42, unknown 75.2
1941 Male, age 53, unknown 74.5
1851 Male, age 51, unknown 67.4
2583 Male, age 75, right hemisphere 61.6
2699 Male, age 18, unknown 57.7
2241 Male, age 72, unknown 57.1
2590 Female, age 75, unknown 53.0
2409 Female, age 72, unknown 51.2
Superior colliculus
nTPM: 71.5
2668 Female, age 75, unknown 81.6
2087 Female, age 72, unknown 79.7
1796 Male, age 53, unknown 76.2
1895 Male, age 76, right hemisphere 75.5
2261 Male, age 18, unknown 75.5
1913 Female, age 42, unknown 72.0
2664 Male, age 75, both hemispheres 70.2
1839 Male, age 51, unknown 64.2
2587 Male, age 74, left hemisphere 61.4
1995 Male, age 72, unknown 58.3
Ventral tegmental area
nTPM: 61.8
2218 Male, age 76, both hemispheres 73.6
1915 Female, age 42, unknown 66.3
2223 Female, age 72, unknown 63.7
2410 Female, age 72, unknown 59.7
1942 Male, age 51, unknown 55.1
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.1
Samples: 183

Max nTPM: 246.1
Min nTPM: 23.1
Std nTPM: 19.3
Median nTPM: 39.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 246.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 93.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 77.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 74.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 69.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 68.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 63.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 62.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 113.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.3
Samples: 4

Max nTPM: 99.7
Min nTPM: 67.9
Sample A Female 99.7
Sample B Female 67.9
Sample C Male 97.2
Sample D Male 80.5
Midbrain
nTPM: 107.9
Samples: 4

Max nTPM: 145.0
Min nTPM: 78.5
Sample A Female 89.1
Sample B Female 78.5
Sample C Male 145.0
Sample D Male 119.0
Periaqueductal gray
nTPM: 71.8
Samples: 3

Max nTPM: 79.5
Min nTPM: 66.1
Sample B Female 66.1
Sample C Male 79.5
Sample D Male 69.9
Superior colliculi
nTPM: 113.7
Samples: 4

Max nTPM: 137.7
Min nTPM: 75.2
Sample A Female 118.5
Sample B Female 75.2
Sample C Male 137.7
Sample D Male 123.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 127.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 127.9
Samples: 4

Max nTPM: 131.6
Min nTPM: 124.2
Sample A Male 126.2
Sample B Male 124.2
Sample C Female 131.6
Sample D Female 129.6

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