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  • HSPB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:514.8 nTPM
HPA Brain:429.3 nTPM
GTEx:514.8 nTPM
FANTOM5:837.8 Scaled Tags Per Million
Pig:148.5 nTPM
Mouse:8.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

429.3
Sample id Sample description nTPM
Amygdala
nTPM: 429.3
2695 Female, age 67, right hemisphere 496.7
2814 Male, age 76, right hemisphere 475.5
1987 Female, age 91, left hemisphere 467.1
2514 Male, age 75, right hemisphere 372.4
2517 Female, age 94, left hemisphere 334.8
Basal amygdala
nTPM: 354.5
2609 Male, age 75, right hemisphere 429.8
1955 Male, age 76, both hemispheres 417.2
2243 Female, age 91, right hemisphere 390.2
2110 Male, age 80, left hemisphere 354.4
2827 Female, age 67, right hemisphere 276.7
2685 Female, age 94, left hemisphere 258.5
Central amygdala
nTPM: 395.6
2515 Male, age 75, right hemisphere 493.5
1905 Male, age 76, both hemispheres 407.8
2239 Male, age 80, left hemisphere 384.6
2826 Female, age 94, left hemisphere 381.9
2701 Female, age 91, right hemisphere 310.1
Corticomedial amygdala
nTPM: 325.5
2829 Male, age 80, left hemisphere 370.3
2242 Female, age 91, right hemisphere 360.1
2240 Male, age 76, both hemispheres 347.0
2428 Male, age 75, right hemisphere 345.4
2535 Female, age 67, right hemisphere 311.5
2429 Female, age 94, left hemisphere 218.4
Lateral amygdala
nTPM: 339.7
2256 Male, age 80, left hemisphere 438.0
2534 Female, age 94, left hemisphere 347.8
1883 Male, age 76, both hemispheres 334.5
2516 Male, age 75, right hemisphere 329.3
2830 Female, age 67, right hemisphere 295.0
2255 Female, age 91, right hemisphere 293.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

514.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 514.8
Samples: 181

Max nTPM: 7586.2
Min nTPM: 92.7
Std nTPM: 731.6
Median nTPM: 318.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7586.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3672.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3002.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2872.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2402.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2315.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2045.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1899.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1641.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1455.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1357.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1286.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1090.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1041.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1037.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1021.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 995.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 985.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 915.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 902.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 750.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 705.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 701.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 683.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 639.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 638.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 625.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 622.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 619.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 604.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 598.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 594.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 588.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 573.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 572.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 570.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 569.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 566.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 562.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 545.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 541.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 537.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 529.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 512.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 509.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 507.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 492.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 486.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 481.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 475.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 468.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 455.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 454.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 450.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 439.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 439.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 434.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 432.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 429.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 429.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 424.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 424.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 417.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 396.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 392.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 390.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 389.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 387.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 385.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 384.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 382.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 380.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 379.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 373.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 362.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 360.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 352.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 350.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 346.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 342.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 342.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 340.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 339.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 334.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 332.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 332.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 331.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 327.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 325.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 320.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 318.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 318.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 316.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 314.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 314.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 312.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 309.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 309.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 307.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 307.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 303.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 301.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 299.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 297.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 297.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 297.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 297.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 295.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 290.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 287.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 286.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 284.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 275.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 274.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 272.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 270.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 267.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 263.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 261.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 259.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 258.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 257.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 255.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 254.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 251.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 251.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 251.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 250.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 248.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 247.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 245.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 242.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 241.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 240.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 238.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 237.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 233.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 231.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 227.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 225.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 218.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 216.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 211.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 209.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 207.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 205.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 205.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 203.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 202.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 201.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 200.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 199.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 196.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 195.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 194.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 193.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 187.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 186.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 185.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 185.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 184.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 184.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 182.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 170.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 170.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 165.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 163.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 159.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 153.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 150.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 148.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 139.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 131.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 129.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 122.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 115.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 102.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 92.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

837.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 837.8
FF:10151-102I7 76 years, female 837.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.5
Pig sample Sample description nTPM
Amygdala
nTPM: 148.5
Samples: 4

Max nTPM: 196.0
Min nTPM: 125.2
Sample A Female 196.0
Sample B Female 144.6
Sample C Male 128.2
Sample D Male 125.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.3
Sample A Male 7.2
Sample B Male 5.3
Sample C Female 11.6
Sample D Female 8.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73514683 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
74363357 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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