MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:648.5 nTPM
HPA Brain:494.2 nTPM
GTEx:648.5 nTPM
FANTOM5:965.1 Scaled Tags Per Million
Pig:316.6 nTPM
Mouse:6.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 494.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 369.1
2666 Male, age 74, left hemisphere 556.9
2828 Female, age 72, unknown 487.5
2586 Male, age 75, left hemisphere 410.8
2019 Male, age 18, unknown 365.0
1827 Male, age 72, unknown 360.2
2219 Male, age 76, both hemispheres 325.8
2411 Female, age 72, unknown 303.9
1830 Male, age 51, unknown 303.3
1833 Male, age 53, unknown 295.6
1870 Female, age 42, unknown 281.6
Dorsal raphe nucleus
nTPM: 434.8
2047 Male, age 72, unknown 531.8
2298 Female, age 72, unknown 463.5
2016 Female, age 72, unknown 451.8
1828 Male, age 53, unknown 444.4
2750 Male, age 76, both hemispheres 282.7
Inferior colliculus
nTPM: 301.0
2849 Male, age 72, unknown 342.6
1848 Female, age 42, unknown 302.2
1890 Male, age 53, unknown 302.0
2097 Female, age 72, unknown 257.4
Median raphe nucleus
nTPM: 412.0
2220 Male, age 76, midline 412.0
Periaquaductal grey, anterior
nTPM: 424.8
1795 Male, age 51, unknown 521.3
1947 Male, age 18, unknown 397.0
2502 Female, age 75, unknown 356.2
Periaquaductal grey, dorsal
nTPM: 419.1
2850 Male, age 76, both hemispheres 678.1
1840 Male, age 53, unknown 337.1
1831 Male, age 72, unknown 334.8
2464 Female, age 72, unknown 326.2
Periaquaductal grey, lateral
nTPM: 494.2
2140 Male, age 76, both hemispheres 707.1
2272 Male, age 74, both hemispheres 400.2
2053 Male, age 18, unknown 375.4
Pretectal area
nTPM: 438.4
2007 Male, age 72, unknown 509.1
1817 Female, age 42, unknown 487.6
2407 Male, age 75, both hemispheres 465.3
1944 Female, age 72, unknown 455.9
2667 Female, age 75, unknown 451.3
2316 Male, age 76, right hemisphere 442.7
1816 Male, age 51, unknown 440.7
2273 Male, age 74, both hemispheres 431.6
2224 Female, age 72, unknown 406.8
2825 Male, age 18, unknown 382.4
1815 Male, age 53, unknown 348.6
Red nucleus
nTPM: 357.8
2725 Female, age 75, unknown 532.3
2785 Male, age 18, unknown 448.9
2503 Female, age 72, unknown 420.1
2769 Male, age 72, unknown 368.0
2227 Male, age 72, unknown 365.4
2823 Male, age 76, right hemisphere 352.1
1865 Male, age 51, unknown 351.4
1954 Female, age 42, unknown 329.0
1821 Female, age 72, unknown 325.9
1904 Male, age 53, unknown 292.0
2584 Male, age 75, left hemisphere 270.6
2588 Male, age 74, left hemisphere 238.3
Substantia nigra
nTPM: 394.9
1941 Male, age 53, unknown 498.8
1851 Male, age 51, unknown 491.7
1916 Female, age 42, unknown 443.8
1889 Female, age 72, unknown 442.6
2699 Male, age 18, unknown 434.4
2409 Female, age 72, unknown 376.9
2590 Female, age 75, unknown 346.2
2583 Male, age 75, right hemisphere 331.6
2665 Male, age 74, both hemispheres 322.5
2241 Male, age 72, unknown 260.1
Superior colliculus
nTPM: 375.4
1796 Male, age 53, unknown 523.3
2664 Male, age 75, both hemispheres 457.0
2261 Male, age 18, unknown 386.5
2087 Female, age 72, unknown 377.7
1995 Male, age 72, unknown 357.8
1913 Female, age 42, unknown 341.8
1839 Male, age 51, unknown 337.1
1895 Male, age 76, right hemisphere 333.7
2587 Male, age 74, left hemisphere 329.4
2668 Female, age 75, unknown 310.2
Ventral tegmental area
nTPM: 382.7
2021 Male, age 53, unknown 428.0
1915 Female, age 42, unknown 427.6
2410 Female, age 72, unknown 406.4
2218 Male, age 76, both hemispheres 368.4
2223 Female, age 72, unknown 355.9
1942 Male, age 51, unknown 309.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 648.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 648.5
Samples: 183

Max nTPM: 7031.9
Min nTPM: 67.6
Std nTPM: 897.0
Median nTPM: 344.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 7031.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6144.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 3949.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3766.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 3074.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 2954.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2936.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2237.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 2174.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 2142.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2140.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 965.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 965.1
FF:10158-103A5 76 years, female 965.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 316.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 315.3
Samples: 4

Max nTPM: 456.7
Min nTPM: 211.0
Sample A Female 456.7
Sample B Female 297.7
Sample C Male 295.9
Sample D Male 211.0
Midbrain
nTPM: 286.9
Samples: 4

Max nTPM: 407.7
Min nTPM: 209.8
Sample A Female 407.7
Sample B Female 257.0
Sample C Male 273.2
Sample D Male 209.8
Periaqueductal gray
nTPM: 256.2
Samples: 3

Max nTPM: 273.1
Min nTPM: 244.2
Sample B Female 251.3
Sample C Male 273.1
Sample D Male 244.2
Superior colliculi
nTPM: 316.6
Samples: 4

Max nTPM: 396.4
Min nTPM: 229.2
Sample A Female 396.4
Sample B Female 381.8
Sample C Male 229.2
Sample D Male 259.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Male 6.0
Sample B Male 5.6
Sample C Female 5.9
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73514683 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
74363357 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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