We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HSPB1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • HSPB1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:479.0 nTPM
HPA Brain:429.8 nTPM
GTEx:479.0 nTPM
FANTOM5:851.3 Scaled Tags Per Million
Pig:441.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

429.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 425.4
1981 Female, age 72, midline 493.5
2194 Female, age 79, both hemispheres 456.4
2565 Male, age 75, midline 455.3
2048 Male, age 55, midline 373.5
2816 Male, age 47, midline 348.2
Cervical spinal cord, dorsal horn
nTPM: 393.4
2721 Male, age 90, both hemispheres 537.1
2173 Female, age 72, unknown 527.7
2296 Male, age 66, both hemispheres 422.1
2069 Male, age 47, both hemispheres 318.5
1877 Male, age 55, unknown 286.5
2297 Male, age 75, both hemispheres 268.3
Cervical spinal cord, ventral horn
nTPM: 429.8
2098 Female, age 72, unknown 704.3
2809 Male, age 90, both hemispheres 504.7
2068 Male, age 55, unknown 387.8
2820 Female, age 79, both hemispheres 366.0
2480 Male, age 75, both hemispheres 319.7
2295 Male, age 66, both hemispheres 296.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

479.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 479.0
Samples: 204

Max nTPM: 9935.8
Min nTPM: 34.0
Std nTPM: 975.3
Median nTPM: 223.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 9935.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5874.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 4052.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3645.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3622.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3036.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2875.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2365.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2159.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1987.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1802.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1782.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1663.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1307.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1289.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1148.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1078.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1039.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 875.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 796.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 775.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 704.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 684.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 679.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 644.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 613.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 613.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 607.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 606.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 576.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 552.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 533.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 532.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 531.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 529.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 521.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 506.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 496.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 487.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 472.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 471.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 464.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 462.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 461.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 458.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 456.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 454.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 413.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 401.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 389.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 381.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 380.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 374.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 370.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 366.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 362.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 351.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 342.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 340.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 340.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 336.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 330.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 326.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 325.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 324.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 312.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 307.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 307.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 305.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 301.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 299.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 295.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 293.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 292.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 292.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 290.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 289.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 285.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 279.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 275.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 273.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 271.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 269.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 265.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 262.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 258.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 257.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 255.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 248.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 245.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 245.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 244.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 243.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 243.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 242.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 235.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 235.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 233.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 233.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 228.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 226.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 223.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 222.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 222.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 222.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 212.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 211.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 209.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 208.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 202.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 201.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 200.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 200.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 194.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 194.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 193.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 192.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 192.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 189.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 188.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 188.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 187.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 186.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 185.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 182.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 180.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 179.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 178.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 175.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 170.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 165.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 163.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 163.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 163.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 162.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 161.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 161.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 159.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 156.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 154.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 153.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 150.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 149.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 144.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 144.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 143.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 142.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 141.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 141.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 140.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 140.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 139.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 138.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 137.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 132.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 131.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 130.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 130.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 130.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 128.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 127.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 125.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 124.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 124.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 123.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 122.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 122.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 119.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 119.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 117.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 116.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 115.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 113.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 111.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 105.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 105.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 100.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 95.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 93.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 92.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 92.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 89.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 88.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 88.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 87.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 87.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 86.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 83.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 79.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 77.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 75.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 74.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 70.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 69.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 63.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 62.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 48.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 41.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 34.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

851.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 851.3
FF:10159-103A6 76 years, female 1147.6
FF:10181-103D1 60 years, female 555.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

441.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 308.6
Samples: 4

Max nTPM: 420.2
Min nTPM: 260.1
Sample A Female 260.1
Sample B Female 262.0
Sample C Male 420.2
Sample D Male 292.1
Ventral spinal cord
nTPM: 441.7
Samples: 4

Max nTPM: 498.5
Min nTPM: 325.2
Sample A Female 454.2
Sample B Female 498.5
Sample C Male 488.7
Sample D Male 325.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo