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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.3
Sample id
Sample description
nTPM
Amygdala nTPM: 119.5
2517
Female, age 94, left hemisphere
161.8
2814
Male, age 76, right hemisphere
142.5
1987
Female, age 91, left hemisphere
128.1
2514
Male, age 75, right hemisphere
103.5
2695
Female, age 67, right hemisphere
61.4
Basal amygdala nTPM: 222.3
2243
Female, age 91, right hemisphere
302.5
2685
Female, age 94, left hemisphere
252.8
2110
Male, age 80, left hemisphere
227.6
2827
Female, age 67, right hemisphere
211.5
2609
Male, age 75, right hemisphere
179.5
1955
Male, age 76, both hemispheres
160.2
Central amygdala nTPM: 156.6
2826
Female, age 94, left hemisphere
266.7
2239
Male, age 80, left hemisphere
192.2
1905
Male, age 76, both hemispheres
125.1
2515
Male, age 75, right hemisphere
104.8
2701
Female, age 91, right hemisphere
94.3
Corticomedial amygdala nTPM: 210.3
2242
Female, age 91, right hemisphere
267.3
2829
Male, age 80, left hemisphere
249.6
2535
Female, age 67, right hemisphere
235.6
2429
Female, age 94, left hemisphere
189.1
2428
Male, age 75, right hemisphere
176.0
2240
Male, age 76, both hemispheres
144.0
Lateral amygdala nTPM: 178.5
2534
Female, age 94, left hemisphere
335.4
2256
Male, age 80, left hemisphere
211.3
1883
Male, age 76, both hemispheres
149.2
2255
Female, age 91, right hemisphere
141.0
2830
Female, age 67, right hemisphere
123.7
2516
Male, age 75, right hemisphere
110.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
227.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 227.4
Samples: 181
Max nTPM: 646.0
Min nTPM: 54.2
Std nTPM: 109.7
Median nTPM: 207.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
646.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
638.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
498.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
484.7
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
466.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
459.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
456.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
452.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
448.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
447.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
443.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
432.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
408.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
408.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
398.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
395.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
387.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
381.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
378.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
378.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
364.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
363.6
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
361.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
354.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
354.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
353.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
350.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
346.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
341.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
335.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
333.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
328.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
326.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
318.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
318.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
318.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
315.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
313.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
310.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
292.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
290.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
288.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
286.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
285.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
284.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
283.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
280.4
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
278.6
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
274.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
274.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
269.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
269.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
268.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
267.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
265.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
262.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
261.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
261.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
260.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
257.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
249.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
249.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
248.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
248.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
247.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
246.3
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
245.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
245.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
243.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
241.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
233.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
232.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
231.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
228.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
227.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
226.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
226.1
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
224.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
224.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
223.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
222.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
220.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
216.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
215.9
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
212.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
211.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
210.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
210.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
209.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
208.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
207.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
207.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
207.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
207.5
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
205.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
203.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
201.6
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
201.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
200.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
197.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
197.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
196.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
195.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
195.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
192.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
191.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
190.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
188.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
187.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
183.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
183.2
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
180.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
180.4
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
178.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
178.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
177.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
177.2
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
175.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
174.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
174.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
170.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
168.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
167.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
166.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
165.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
160.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
159.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
157.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
155.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
150.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
150.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
146.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
145.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
143.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
143.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
142.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
140.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
139.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
138.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
133.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
131.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
131.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
130.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
128.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
127.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
126.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
126.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
125.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
125.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
121.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
120.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
118.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
118.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
117.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
115.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
115.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
112.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
111.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
110.9
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
109.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
108.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
108.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
107.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
105.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
103.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
101.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
100.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
99.8
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
98.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
97.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
97.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
96.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
91.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
91.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
81.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
80.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
74.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
65.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
62.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
55.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
54.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
161.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 161.3
Samples: 4
Max nTPM: 209.9
Min nTPM: 124.0
Sample A
Female
209.9
Sample B
Female
133.1
Sample C
Male
178.2
Sample D
Male
124.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
282.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 282.3
Samples: 4
Max nTPM: 318.2
Min nTPM: 259.2
Sample A
Male
263.5
Sample B
Male
288.1
Sample C
Female
318.2
Sample D
Female
259.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
