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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • ALDOC
EVOLUTIONARY AMYGDALA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

25.148
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1055.8 nTPM
HPA Brain:848.4 nTPM
GTEx:1055.8 nTPM
FANTOM5:423.3 Scaled Tags Per Million
Macaque:407.4 nTPM
Mouse:811.3 nTPM
Rat:559.7 nTPM
Pig:924.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA067442
Amygdala mean intensity 25.148
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the lateral olfactory tract 25.148
Basal medial amygdaloid nucleus 12.163
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 9.178
Cortical amygdala 21.013
Central amygdala 3.847
Medial amygdaloid nucleus 11.895

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

848.4
Sample id Sample description nTPM
Basal amygdala
nTPM: 756.5
2609 Male, age 75, right hemisphere 1515.5
2243 Female, age 91, right hemisphere 836.1
1955 Male, age 76, both hemispheres 687.9
2110 Male, age 80, left hemisphere 605.9
2685 Female, age 94, left hemisphere 529.9
2827 Female, age 67, right hemisphere 363.5
Central amygdala
nTPM: 848.4
2515 Male, age 75, right hemisphere 1056.2
1905 Male, age 76, both hemispheres 1001.8
2701 Female, age 91, right hemisphere 757.1
2239 Male, age 80, left hemisphere 731.0
2826 Female, age 94, left hemisphere 695.6
Corticomedial amygdala
nTPM: 782.4
2428 Male, age 75, right hemisphere 1347.9
2242 Female, age 91, right hemisphere 871.8
2429 Female, age 94, left hemisphere 738.3
2829 Male, age 80, left hemisphere 714.9
2240 Male, age 76, both hemispheres 588.1
2535 Female, age 67, right hemisphere 433.3
Lateral amygdala
nTPM: 796.7
2516 Male, age 75, right hemisphere 1448.1
1883 Male, age 76, both hemispheres 965.3
2255 Female, age 91, right hemisphere 739.2
2534 Female, age 94, left hemisphere 624.3
2256 Male, age 80, left hemisphere 600.5
2830 Female, age 67, right hemisphere 402.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1055.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1055.8
Samples: 181

Max nTPM: 2247.8
Min nTPM: 261.9
Std nTPM: 398.2
Median nTPM: 1016.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2247.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2127.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2084.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2011.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1925.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1925.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1924.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1923.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1913.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1907.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1821.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1742.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1728.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1708.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1659.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1618.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1612.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1583.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1567.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1544.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1518.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1500.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1496.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1489.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1469.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1455.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1455.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1438.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1435.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1421.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1418.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1417.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1400.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1393.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1381.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1370.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1358.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1352.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1352.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1337.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1325.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1313.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1311.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1283.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1280.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1267.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1260.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1260.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1260.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1258.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1246.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1239.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1239.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1232.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1229.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1221.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1221.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1214.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1207.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1207.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1198.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1196.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1192.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1185.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1181.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1173.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1167.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1160.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1156.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1149.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1148.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1148.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1145.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1134.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1130.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1126.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1108.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1097.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1093.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1092.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1084.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1083.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1071.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1067.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1055.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1033.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1032.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1032.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1029.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1016.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1016.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1014.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1014.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1008.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1004.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1000.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 999.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 994.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 979.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 978.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 974.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 954.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 949.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 946.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 945.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 944.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 942.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 937.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 933.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 932.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 903.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 901.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 894.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 893.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 877.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 873.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 866.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 864.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 860.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 843.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 830.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 817.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 813.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 810.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 808.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 807.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 806.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 802.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 792.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 788.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 786.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 784.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 782.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 777.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 777.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 775.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 773.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 768.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 758.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 754.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 743.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 742.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 716.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 712.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 712.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 703.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 695.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 693.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 681.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 680.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 673.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 666.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 660.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 659.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 653.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 652.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 647.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 641.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 617.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 605.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 602.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 597.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 584.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 582.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 580.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 571.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 557.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 551.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 542.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 459.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 455.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 450.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 440.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 432.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 418.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 405.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 388.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 371.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 334.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 272.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 261.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

423.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 423.3
FF:10151-102I7 76 years, female 423.3

AMYGDALA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.4
Macaque sample Sample description nTPM
Amygdala
nTPM: 407.5
Samples: 2

Max nTPM: 423.4
Min nTPM: 391.5
Sample A 391.5
Sample B 423.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

924.3
Pig sample Sample description nTPM
Amygdala
nTPM: 924.3
Samples: 4

Max nTPM: 1093.4
Min nTPM: 853.6
Sample A Female 1093.4
Sample B Female 853.6
Sample C Male 896.5
Sample D Male 853.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 811.3
Samples: 4

Max nTPM: 904.5
Min nTPM: 755.5
Sample A 755.5
Sample B 783.5
Sample C 904.5
Sample D 801.7

AMYGDALA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

559.7
Rat sample Sample description nTPM
Amygdala
nTPM: 559.7
Samples: 4

Max nTPM: 609.1
Min nTPM: 476.9
Sample A 587.0
Sample A 609.1
Sample A 565.8
Sample A 476.9

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