BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:805.7 nTPM
HPA Brain:862.8 nTPM
GTEx:805.7 nTPM
FANTOM5:217.3 Scaled Tags Per Million
Macaque:661.5 nTPM
Mouse:1086.2 nTPM
Rat:898.3 nTPM
Pig:1423.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 862.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 713.2
2019 Male, age 18, unknown 877.7
2586 Male, age 75, left hemisphere 862.6
1827 Male, age 72, unknown 826.2
2411 Female, age 72, unknown 804.6
2828 Female, age 72, unknown 737.5
2219 Male, age 76, both hemispheres 671.9
1833 Male, age 53, unknown 649.8
1870 Female, age 42, unknown 613.9
1830 Male, age 51, unknown 589.7
2666 Male, age 74, left hemisphere 497.6
Dorsal raphe nucleus
nTPM: 826.3
2298 Female, age 72, unknown 951.3
2047 Male, age 72, unknown 922.6
1828 Male, age 53, unknown 833.2
2750 Male, age 76, both hemispheres 726.9
2016 Female, age 72, unknown 697.5
Inferior colliculus
nTPM: 862.8
2097 Female, age 72, unknown 968.3
1848 Female, age 42, unknown 912.8
2849 Male, age 72, unknown 816.8
1890 Male, age 53, unknown 753.3
Median raphe nucleus
nTPM: 738.9
2220 Male, age 76, midline 738.9
Periaquaductal grey, anterior
nTPM: 630.0
2502 Female, age 75, unknown 665.7
1795 Male, age 51, unknown 638.7
1947 Male, age 18, unknown 585.5
Periaquaductal grey, dorsal
nTPM: 676.3
2464 Female, age 72, unknown 850.5
1840 Male, age 53, unknown 707.8
2850 Male, age 76, both hemispheres 621.3
1831 Male, age 72, unknown 525.7
Periaquaductal grey, lateral
nTPM: 568.9
2140 Male, age 76, both hemispheres 628.0
2053 Male, age 18, unknown 585.7
2272 Male, age 74, both hemispheres 493.1
Pretectal area
nTPM: 798.3
2007 Male, age 72, unknown 1152.9
1817 Female, age 42, unknown 1110.3
1944 Female, age 72, unknown 1001.2
1816 Male, age 51, unknown 940.4
2667 Female, age 75, unknown 838.2
1815 Male, age 53, unknown 769.0
2224 Female, age 72, unknown 740.6
2825 Male, age 18, unknown 653.2
2316 Male, age 76, right hemisphere 613.4
2273 Male, age 74, both hemispheres 552.4
2407 Male, age 75, both hemispheres 409.9
Red nucleus
nTPM: 733.6
1821 Female, age 72, unknown 948.3
1954 Female, age 42, unknown 818.8
2588 Male, age 74, left hemisphere 807.0
2503 Female, age 72, unknown 797.8
2785 Male, age 18, unknown 792.6
2823 Male, age 76, right hemisphere 749.2
2227 Male, age 72, unknown 737.9
2769 Male, age 72, unknown 732.1
2725 Female, age 75, unknown 709.9
1865 Male, age 51, unknown 683.7
1904 Male, age 53, unknown 584.8
2584 Male, age 75, left hemisphere 441.6
Substantia nigra
nTPM: 720.9
1941 Male, age 53, unknown 1132.3
1889 Female, age 72, unknown 955.3
2665 Male, age 74, both hemispheres 847.6
1916 Female, age 42, unknown 738.2
1851 Male, age 51, unknown 642.3
2241 Male, age 72, unknown 633.2
2590 Female, age 75, unknown 609.0
2583 Male, age 75, right hemisphere 568.0
2699 Male, age 18, unknown 559.6
2409 Female, age 72, unknown 523.7
Superior colliculus
nTPM: 656.1
2087 Female, age 72, unknown 872.7
1895 Male, age 76, right hemisphere 791.3
1839 Male, age 51, unknown 726.1
2261 Male, age 18, unknown 713.3
1796 Male, age 53, unknown 688.2
2668 Female, age 75, unknown 648.7
2587 Male, age 74, left hemisphere 592.4
2664 Male, age 75, both hemispheres 573.5
1913 Female, age 42, unknown 496.5
1995 Male, age 72, unknown 458.2
Ventral tegmental area
nTPM: 645.4
2410 Female, age 72, unknown 780.6
2218 Male, age 76, both hemispheres 692.9
1915 Female, age 42, unknown 648.7
1942 Male, age 51, unknown 623.1
2223 Female, age 72, unknown 608.4
2021 Male, age 53, unknown 518.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 805.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 805.7
Samples: 183

Max nTPM: 2223.1
Min nTPM: 142.0
Std nTPM: 354.6
Median nTPM: 747.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2223.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2158.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2147.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1674.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1640.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1580.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1574.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1566.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1488.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1453.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1414.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 217.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 217.3
FF:10158-103A5 76 years, female 217.3

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 661.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 593.8
Samples: 1

Max nTPM: 593.8
Min nTPM: 593.8
Sample A 593.8
Midbrain
nTPM: 490.6
Samples: 1

Max nTPM: 490.6
Min nTPM: 490.6
Sample A 490.6
Superior colliculi
nTPM: 661.5
Samples: 1

Max nTPM: 661.5
Min nTPM: 661.5
Sample A 661.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1423.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1386.3
Samples: 3

Max nTPM: 1598.8
Min nTPM: 1026.9
Sample A Female 1598.8
Sample B Female 1026.9
Sample C Male 1533.3
Midbrain
nTPM: 1423.8
Samples: 3

Max nTPM: 1674.9
Min nTPM: 1242.9
Sample B Female 1242.9
Sample C Male 1674.9
Sample D Male 1353.5
Periaqueductal gray
nTPM: 1307.7
Samples: 3

Max nTPM: 1526.5
Min nTPM: 1152.9
Sample B Female 1243.7
Sample C Male 1526.5
Sample D Male 1152.9
Superior colliculi
nTPM: 1390.9
Samples: 4

Max nTPM: 1755.1
Min nTPM: 713.6
Sample A Female 1538.5
Sample B Female 713.6
Sample C Male 1755.1
Sample D Male 1556.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1086.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1086.2
Samples: 4

Max nTPM: 1128.8
Min nTPM: 1047.2
Sample A 1128.8
Sample B 1082.2
Sample C 1047.2
Sample D 1086.4

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 898.3
Rat sample Sample description nTPM
Midbrain
nTPM: 898.3
Samples: 4

Max nTPM: 904.8
Min nTPM: 891.3
Sample A 904.2
Sample A 904.8
Sample A 892.8
Sample A 891.3

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