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BETA
  • SUMMARY

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  • ALDOC
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

27.282
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:1349.1 nTPM
FANTOM5:354.3 Scaled Tags Per Million
Macaque:637.6 nTPM
Mouse:959.3 nTPM
Rat:1284.7 nTPM
Pig:1602.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA067442
Medulla oblongata mean intensity 27.282
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Nucleus of the solitary tract 11.023
Raphe magnus nucleus 0.428
Cochlear nucleus 23.938
Lateral paragigantocellular nucleus 25.129
Raphe pallidus nucleus 3.321
Facial nucleus 17.294
Hypoglossal nucleus -
Ambiguus nucleus 22.419
External cuneate nucleus 11.485
Inferior olivary nucleus 21.704
Raphe obscures nucleus 5.704
Dorsal motor nucleus of vagus -

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1349.1
Sample id Sample description nTPM
Area postrema
nTPM: 519.0
2054 Male, age 76, both hemispheres 702.0
2306 Male, age 80, both hemispheres 465.1
2799 Male, age 61, both hemispheres 389.8
Dorsal medullary reticular nucleus
nTPM: 875.2
2040 Female, age 85, both hemispheres 1177.6
2373 Male, age 61, both hemispheres 757.3
2088 Male, age 76, both hemispheres 690.6
Dorsal motor vagal complex
nTPM: 730.7
2000 Male, age 74, unknown 1101.9
2133 Female, age 91, both hemispheres 922.5
2797 Male, age 61, both hemispheres 772.3
2643 Male, age 74, both hemispheres 690.2
2844 Male, age 55, unknown 685.0
2813 Female, age 72, unknown 662.1
2185 Male, age 76, both hemispheres 645.9
2807 Female, age 85, both hemispheres 365.3
Gigantocellular reticular nuclei, medullary
nTPM: 876.2
2462 Male, age 74, both hemispheres 1113.3
1876 Female, age 85, both hemispheres 926.9
2387 Female, age 91, both hemispheres 922.0
2022 Male, age 76, right hemisphere 860.1
2310 Male, age 80, both hemispheres 847.3
2314 Male, age 61, both hemispheres 587.7
Gigantocellular reticular nuclei, pars
nTPM: 1073.1
2168 Male, age 76, both hemispheres 1749.2
2084 Female, age 85, both hemispheres 1069.9
2706 Male, age 80, both hemispheres 878.3
2330 Male, age 80, both hemispheres 870.4
2336 Male, age 61, both hemispheres 797.7
Inferior olive
nTPM: 925.7
2563 Male, age 74, both hemispheres 1338.8
2085 Female, age 85, both hemispheres 1146.8
2379 Male, age 80, both hemispheres 848.4
2628 Female, age 91, both hemispheres 811.2
2178 Male, age 61, both hemispheres 483.2
Lateral medullary reticular nucleus
nTPM: 820.1
2044 Male, age 76, both hemispheres 1330.2
2804 Female, age 91, both hemispheres 989.0
2190 Female, age 85, both hemispheres 787.6
2852 Male, age 80, both hemispheres 647.0
2305 Male, age 74, both hemispheres 619.1
2374 Male, age 61, both hemispheres 547.8
Medial olivary nucleus
nTPM: 586.8
2138 Female, age 91, both hemispheres 957.1
2851 Male, age 80, both hemispheres 616.1
1962 Male, age 76, both hemispheres 548.4
1943 Male, age 61, both hemispheres 225.7
Medial vestibular nucleus
nTPM: 1049.9
2134 Male, age 76, both hemispheres 1235.0
2093 Male, age 80, both hemispheres 1114.1
2624 Male, age 61, both hemispheres 1052.7
2743 Female, age 85, both hemispheres 1038.9
2803 Female, age 91, both hemispheres 998.9
2801 Male, age 74, both hemispheres 859.8
Motor hypoglossal nucleus
nTPM: 815.5
2125 Female, age 91, both hemispheres 1063.8
2461 Male, age 61, both hemispheres 935.9
2132 Female, age 85, both hemispheres 889.5
2182 Male, age 80, both hemispheres 637.0
2277 Male, age 76, both hemispheres 551.2
Nucleus ambiguus
nTPM: 923.0
2096 Female, age 85, both hemispheres 1084.0
2071 Male, age 76, both hemispheres 762.0
Nucleus cuneatus
nTPM: 703.1
2564 Male, age 74, both hemispheres 978.8
2131 Male, age 76, both hemispheres 893.2
2376 Male, age 61, both hemispheres 813.0
2100 Male, age 76, both hemispheres 758.0
2562 Male, age 61, both hemispheres 741.4
2805 Female, age 91, both hemispheres 730.8
2381 Male, age 80, both hemispheres 514.1
2380 Male, age 80, both hemispheres 485.9
2808 Female, age 85, both hemispheres 413.0
Nucleus gracilis
nTPM: 539.1
2627 Male, age 74, both hemispheres 862.9
2299 Female, age 85, both hemispheres 414.4
2382 Male, age 80, both hemispheres 339.9
Nucleus raphe obscurus
nTPM: 629.3
2800 Male, age 61, midline 744.2
2845 Female, age 85, midline 741.1
2142 Male, age 76, midline 402.6
Nucleus raphe pallidus
nTPM: 677.6
2183 Male, age 80, midline 814.1
1924 Male, age 61, midline 810.3
2145 Male, age 76, midline 408.4
Nucleus tractus solitarii
nTPM: 623.1
2144 Female, age 91, right hemisphere 845.4
2656 Male, age 76, both hemispheres 675.1
2191 Female, age 85, both hemispheres 587.5
2307 Male, age 80, both hemispheres 384.3
Parvicellular reticular nuclei
nTPM: 938.8
2095 Male, age 76, both hemispheres 1043.9
2119 Male, age 80, both hemispheres 937.9
2558 Male, age 74, both hemispheres 834.7
Parvicellular reticular nuclei, medullary
nTPM: 910.7
2091 Female, age 85, both hemispheres 1064.8
2189 Female, age 91, both hemispheres 902.3
2181 Male, age 80, left hemisphere 764.9
Peritrigeminal nucleus
nTPM: 1182.4
2136 Male, age 76, both hemispheres 1220.6
2179 Male, age 61, both hemispheres 1217.9
2067 Female, age 85, both hemispheres 1108.7
Prepositus hypoglossal nucleus
nTPM: 922.6
2855 Female, age 85, right hemisphere 970.3
2086 Male, age 80, both hemispheres 874.9
Spinal trigeminal nucleus, caudal
nTPM: 802.1
2390 Female, age 91, both hemispheres 1147.7
2447 Male, age 76, both hemispheres 901.0
2308 Male, age 80, both hemispheres 679.9
2642 Male, age 74, both hemispheres 672.1
2312 Male, age 61, both hemispheres 609.9
Spinal trigeminal nucleus, interpolar
nTPM: 1349.1
2625 Male, age 61, both hemispheres 2379.2
2066 Male, age 76, right hemisphere 1710.0
2033 Male, age 80, both hemispheres 926.2
2389 Female, age 91, both hemispheres 909.2
2386 Female, age 85, both hemispheres 820.9
Spinal vestibular nucleus
nTPM: 880.6
2186 Female, age 91, both hemispheres 972.7
2806 Female, age 85, both hemispheres 948.0
2780 Male, age 80, both hemispheres 941.9
2748 Male, age 76, both hemispheres 900.9
2796 Male, age 61, both hemispheres 869.5
2384 Male, age 74, both hemispheres 650.7
Superior vestibular nucleus
nTPM: 845.3
2061 Male, age 76, both hemispheres 887.6
2015 Male, age 80, both hemispheres 882.8
2383 Male, age 74, both hemispheres 765.4
Ventral medullary reticular nucleus
nTPM: 773.0
2060 Male, age 76, both hemispheres 822.2
2372 Male, age 61, both hemispheres 723.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 935.5
1986 Male, age 76, both hemispheres 1196.4
2302 Female, age 91, both hemispheres 1100.1
2741 Female, age 85, both hemispheres 1036.7
2180 Male, age 61, both hemispheres 703.8
2118 Male, age 80, both hemispheres 640.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 354.3
FF:10038-101F2 18-64 years, mixed 493.2
FF:10174-103C3 60 years, female 298.8
FF:10155-103A2 76 years, female 271.0

MEDULLA OBLONGATA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

637.6
Macaque sample Sample description nTPM
Medulla oblongata
nTPM: 637.6
Samples: 1

Max nTPM: 637.6
Min nTPM: 637.6
Sample A 637.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1602.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 1602.6
Samples: 4

Max nTPM: 1795.6
Min nTPM: 1321.0
Sample A Female 1321.0
Sample B Female 1502.5
Sample C Male 1795.6
Sample D Male 1791.2

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

959.3
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 959.3
Samples: 4

Max nTPM: 1042.3
Min nTPM: 850.9
Sample A 1018.2
Sample B 850.9
Sample C 925.7
Sample D 1042.3

MEDULLA OBLONGATA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1284.7
Rat sample Sample description nTPM
Medulla oblongata
nTPM: 1284.7
Samples: 4

Max nTPM: 1379.5
Min nTPM: 1218.8
Sample A 1218.8
Sample A 1278.5
Sample A 1379.5
Sample A 1262.1

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