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  • CDK2AP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:243.3 nTPM
HPA Brain:139.1 nTPM
GTEx:243.3 nTPM
FANTOM5:200.0 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:113.2 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.1
Sample id Sample description nTPM
Amygdala
nTPM: 139.1
2695 Female, age 67, right hemisphere 187.0
1987 Female, age 91, left hemisphere 154.5
2814 Male, age 76, right hemisphere 136.5
2514 Male, age 75, right hemisphere 115.8
2517 Female, age 94, left hemisphere 101.4
Basal amygdala
nTPM: 92.1
2609 Male, age 75, right hemisphere 142.1
2110 Male, age 80, left hemisphere 103.0
1955 Male, age 76, both hemispheres 99.4
2243 Female, age 91, right hemisphere 73.2
2685 Female, age 94, left hemisphere 69.2
2827 Female, age 67, right hemisphere 65.6
Central amygdala
nTPM: 116.3
2515 Male, age 75, right hemisphere 161.3
2826 Female, age 94, left hemisphere 131.1
1905 Male, age 76, both hemispheres 125.9
2239 Male, age 80, left hemisphere 85.0
2701 Female, age 91, right hemisphere 78.0
Corticomedial amygdala
nTPM: 84.6
2428 Male, age 75, right hemisphere 125.9
2829 Male, age 80, left hemisphere 93.1
2242 Female, age 91, right hemisphere 85.6
2240 Male, age 76, both hemispheres 81.2
2429 Female, age 94, left hemisphere 66.4
2535 Female, age 67, right hemisphere 55.3
Lateral amygdala
nTPM: 106.6
2516 Male, age 75, right hemisphere 146.7
2256 Male, age 80, left hemisphere 123.8
1883 Male, age 76, both hemispheres 117.8
2830 Female, age 67, right hemisphere 92.9
2534 Female, age 94, left hemisphere 89.9
2255 Female, age 91, right hemisphere 68.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 243.3
Samples: 181

Max nTPM: 624.1
Min nTPM: 88.3
Std nTPM: 80.7
Median nTPM: 227.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 624.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 503.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 481.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 461.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 461.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 448.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 442.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 416.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 396.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 388.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 378.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 377.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 374.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 373.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 361.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 351.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 351.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 346.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 345.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 341.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 338.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 338.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 338.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 334.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 329.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 321.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 321.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 318.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 317.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 310.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 306.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 301.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 301.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 295.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 294.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 291.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 289.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 287.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 284.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 282.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 281.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 280.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 280.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 279.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 278.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 275.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 274.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 273.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 273.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 271.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 270.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 270.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 269.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 268.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 265.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 264.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 263.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 260.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 260.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 259.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 257.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 257.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 256.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 256.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 256.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 256.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 256.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 254.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 252.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 252.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 252.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 251.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 250.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 246.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 245.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 245.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 244.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 243.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 243.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 242.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 241.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 240.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 238.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 234.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 233.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 233.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 233.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 231.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 231.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 230.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 227.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 227.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 227.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 227.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 225.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 225.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 224.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 224.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 223.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 221.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 220.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 220.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 220.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 219.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 218.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 215.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 215.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 214.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 212.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 211.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 211.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 211.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 210.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 210.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 209.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 209.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 208.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 207.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 207.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 207.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 206.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 205.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 203.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 202.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 202.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 201.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 200.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 197.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 197.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 196.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 195.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 193.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 192.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 191.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 190.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 190.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 190.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 189.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 187.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 186.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 184.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 183.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 182.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 181.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 181.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 179.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 177.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 177.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 176.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 175.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 175.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 175.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 168.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 164.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 163.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 160.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 157.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 155.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 153.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 151.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 151.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 151.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 150.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 149.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 147.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 144.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 141.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 141.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 134.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 127.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 123.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 120.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 119.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 105.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 104.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 88.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

200.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 200.0
FF:10151-102I7 76 years, female 200.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.0
Pig sample Sample description nTPM
Amygdala
nTPM: 38.0
Samples: 4

Max nTPM: 44.1
Min nTPM: 31.3
Sample A Female 44.1
Sample B Female 40.1
Sample C Male 36.3
Sample D Male 31.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 113.2
Samples: 4

Max nTPM: 148.8
Min nTPM: 94.5
Sample A Male 100.9
Sample B Male 108.6
Sample C Female 148.8
Sample D Female 94.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.3
633273 Antisense, RP_040907_02_C08, Mouse strain C57BL/6J (56 days, male) 2.3

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