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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:235.3 nTPM
HPA Brain:305.8 nTPM
GTEx:235.3 nTPM
FANTOM5:496.9 Scaled Tags Per Million
Pig:214.8 nTPM
Mouse:744.7 nTPM
Allen mouse:29.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

305.8
Sample id Sample description nTPM
Amygdala
nTPM: 305.8
2814 Male, age 76, right hemisphere 352.0
2514 Male, age 75, right hemisphere 344.6
2695 Female, age 67, right hemisphere 319.6
1987 Female, age 91, left hemisphere 272.8
2517 Female, age 94, left hemisphere 240.0
Basal amygdala
nTPM: 233.9
2110 Male, age 80, left hemisphere 275.9
1955 Male, age 76, both hemispheres 273.5
2609 Male, age 75, right hemisphere 251.3
2685 Female, age 94, left hemisphere 214.0
2243 Female, age 91, right hemisphere 211.3
2827 Female, age 67, right hemisphere 177.2
Central amygdala
nTPM: 269.2
2515 Male, age 75, right hemisphere 309.0
1905 Male, age 76, both hemispheres 306.0
2826 Female, age 94, left hemisphere 271.0
2239 Male, age 80, left hemisphere 250.1
2701 Female, age 91, right hemisphere 209.9
Corticomedial amygdala
nTPM: 252.8
2428 Male, age 75, right hemisphere 301.2
2829 Male, age 80, left hemisphere 295.7
2240 Male, age 76, both hemispheres 276.2
2429 Female, age 94, left hemisphere 265.7
2242 Female, age 91, right hemisphere 226.1
2535 Female, age 67, right hemisphere 151.7
Lateral amygdala
nTPM: 251.5
1883 Male, age 76, both hemispheres 332.7
2516 Male, age 75, right hemisphere 323.2
2534 Female, age 94, left hemisphere 252.4
2830 Female, age 67, right hemisphere 231.0
2256 Male, age 80, left hemisphere 198.9
2255 Female, age 91, right hemisphere 170.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 235.3
Samples: 181

Max nTPM: 414.7
Min nTPM: 126.3
Std nTPM: 48.2
Median nTPM: 231.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 414.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 408.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 387.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 347.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 333.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 331.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 323.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 319.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 319.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 315.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 311.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 310.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 308.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 304.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 296.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 296.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 295.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 293.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 292.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 289.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 288.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 287.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 287.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 285.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 283.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 282.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 282.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 281.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 280.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 276.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 276.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 276.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 276.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 276.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 274.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 274.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 272.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 272.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 271.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 267.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 267.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 265.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 265.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 263.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 263.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 262.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 261.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 260.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 259.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 259.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 259.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 258.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 258.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 258.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 257.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 256.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 255.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 253.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 252.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 252.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 252.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 251.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 250.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 249.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 248.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 248.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 248.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 246.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 246.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 245.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 245.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 245.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 242.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 240.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 239.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 239.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 239.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 238.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 236.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 236.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 236.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 235.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 233.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 233.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 232.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 232.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 232.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 231.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 231.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 229.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 229.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 229.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 229.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 229.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 228.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 228.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 228.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 227.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 227.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 227.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 226.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 226.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 225.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 224.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 224.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 224.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 223.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 222.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 220.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 219.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 219.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 219.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 219.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 218.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 217.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 217.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 217.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 217.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 216.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 215.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 215.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 215.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 214.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 211.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 210.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 210.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 208.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 208.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 207.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 206.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 205.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 205.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 203.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 203.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 200.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 198.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 197.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 197.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 194.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 194.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 193.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 192.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 191.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 191.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 190.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 189.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 188.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 188.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 188.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 187.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 186.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 186.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 185.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 185.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 184.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 182.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 181.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 180.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 179.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 173.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 173.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 170.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 170.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 170.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 166.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 164.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 161.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 161.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 158.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 156.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 154.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 152.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 149.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 141.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

496.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 496.9
FF:10151-102I7 76 years, female 496.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.8
Pig sample Sample description nTPM
Amygdala
nTPM: 214.8
Samples: 4

Max nTPM: 256.0
Min nTPM: 175.9
Sample A Female 256.0
Sample B Female 246.6
Sample C Male 175.9
Sample D Male 180.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

744.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 744.7
Samples: 4

Max nTPM: 793.6
Min nTPM: 702.3
Sample A Male 793.6
Sample B Male 744.9
Sample C Female 702.3
Sample D Female 737.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

29.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.9
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 30.6
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 29.1
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 28.8
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 28.5

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