We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SERINC1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SERINC1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:239.6 nTPM
HPA Brain:359.6 nTPM
GTEx:239.6 nTPM
FANTOM5:562.0 Scaled Tags Per Million
Pig:334.4 nTPM
Mouse:840.6 nTPM
Allen mouse:27.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035738Antibody HPA035739
Glial cells LowNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

359.6
Sample id Sample description nTPM
Hippocampus
nTPM: 273.6
1898 Male, age 80, left hemisphere 385.7
1855 Male, age 76, left hemisphere 280.8
1911 Female, age 85, right hemisphere 257.7
2529 Female, age 94, left hemisphere 251.6
2621 Female, age 67, right hemisphere 250.7
2148 Female, age 91, left hemisphere 214.8
Dentate gyrus
nTPM: 269.4
1927 Female, age 91, both hemispheres 316.9
2010 Male, age 76, both hemispheres 316.1
2528 Male, age 74, both hemispheres 267.7
2530 Female, age 94, left hemisphere 267.3
2246 Female, age 85, both hemispheres 255.1
2531 Female, age 67, both hemispheres 193.1
Entorhinal gyrus
nTPM: 269.2
1938 Female, age 85, left hemisphere 336.2
2764 Male, age 80, right hemisphere 301.5
1787 Male, age 76, left hemisphere 273.7
2117 Female, age 91, right hemisphere 258.4
2686 Male, age 75, right hemisphere 231.0
2613 Female, age 94, left hemisphere 214.2
Hippocampus, CA1
nTPM: 303.4
2749 Male, age 80, left hemisphere 432.7
1873 Female, age 85, both hemispheres 311.2
2045 Male, age 76, both hemispheres 269.4
2527 Male, age 74, both hemispheres 263.7
2082 Female, age 91, right hemisphere 239.7
Hippocampus, CA2
nTPM: 293.9
1892 Male, age 76, both hemispheres 386.0
1963 Male, age 80, left hemisphere 326.0
2249 Male, age 74, both hemispheres 302.0
1940 Female, age 85, left hemisphere 269.6
2113 Female, age 91, right hemisphere 240.7
2437 Female, age 94, left hemisphere 239.2
Hippocampus, CA3
nTPM: 268.2
2137 Male, age 80, left hemisphere 375.8
1867 Male, age 76, both hemispheres 327.4
1891 Female, age 85, both hemispheres 285.1
2436 Male, age 74, both hemispheres 257.8
2620 Female, age 94, left hemisphere 190.7
2861 Female, age 67, both hemispheres 172.7
Parahippocampal cortex
nTPM: 277.4
1850 Male, age 80, both hemispheres 413.2
1990 Female, age 91, right hemisphere 306.0
1933 Female, age 85, both hemispheres 305.6
2250 Female, age 67, right hemisphere 281.2
2018 Male, age 76, both hemispheres 280.3
2693 Female, age 94, both hemispheres 272.4
2245 Female, age 91, both hemispheres 259.8
2532 Female, age 72, left hemisphere 258.3
2692 Male, age 74, both hemispheres 218.0
2622 Female, age 67, right hemisphere 179.4
Perirhinal gyrus
nTPM: 359.6
1841 Female, age 85, right hemisphere 398.9
1794 Male, age 80, right hemisphere 383.7
1847 Female, age 91, left hemisphere 379.0
2848 Male, age 76, right hemisphere 332.3
2521 Female, age 94, right hemisphere 304.2
Subiculum
nTPM: 264.2
1901 Male, age 80, both hemispheres 317.9
1977 Female, age 85, both hemispheres 311.0
2042 Male, age 76, both hemispheres 260.3
2438 Female, age 94, left hemisphere 256.9
2729 Female, age 91, right hemisphere 230.5
2619 Male, age 74, both hemispheres 208.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 239.6
Samples: 255

Max nTPM: 433.3
Min nTPM: 105.8
Std nTPM: 56.3
Median nTPM: 234.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 433.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 420.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 416.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 397.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 393.7
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 386.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 379.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 376.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 370.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 363.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 358.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 346.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 344.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 339.3
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 337.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 336.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 334.6
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 331.1
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 329.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 322.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 322.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 320.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 318.9
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 316.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 316.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 315.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 313.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 306.8
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 306.7
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 306.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 304.9
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 304.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 303.7
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 303.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 303.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 301.5
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 299.6
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 293.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 292.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 292.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 291.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 291.2
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 290.8
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 288.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 284.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 284.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 283.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 283.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 282.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 281.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 281.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 280.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 280.7
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 279.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 279.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 277.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 277.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 276.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 275.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 274.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 273.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 273.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 272.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 270.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 269.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 269.2
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 269.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 268.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 268.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 267.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 266.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 265.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 265.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 264.3
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 263.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 262.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 261.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 260.2
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 258.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 258.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 258.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 258.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 257.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 257.4
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 256.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 256.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 255.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 252.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 252.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 252.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 251.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 251.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 251.1
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 251.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 250.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 250.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 250.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 250.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 248.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 247.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 246.2
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 245.9
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 245.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 245.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 244.6
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 242.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 242.1
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 242.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 241.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 241.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 240.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 240.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 240.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 240.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 239.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 239.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 239.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 239.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 238.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 238.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 238.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 237.6
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 237.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 237.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 236.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 236.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 235.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 234.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 234.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 234.5
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 234.0
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 233.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 233.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 232.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 232.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 232.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 231.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 231.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 231.1
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 231.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 230.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 229.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 228.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 228.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 225.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 225.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 224.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 223.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 223.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 222.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 222.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 220.1
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 219.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 219.1
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 219.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 219.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 218.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 217.5
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 216.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 216.3
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 216.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 215.4
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 215.3
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 214.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 214.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 213.7
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 212.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 211.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 211.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 210.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 209.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 209.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 209.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 208.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 208.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 206.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 206.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 205.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 204.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 204.3
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 202.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 202.1
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 201.4
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 200.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 200.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 199.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 199.3
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 199.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 198.7
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 198.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 198.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 197.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 195.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 193.4
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 193.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 192.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 191.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 191.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 191.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 190.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 190.5
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 190.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 190.4
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 190.2
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 190.0
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 188.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 187.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 186.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 186.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 185.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 184.9
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 184.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 184.7
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 184.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 184.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 184.2
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 183.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 183.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 182.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 182.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 182.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 182.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 181.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 179.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 179.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 179.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 177.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 176.9
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 175.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 174.6
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 174.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 174.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 172.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 172.0
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 171.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 170.8
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 169.2
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 169.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 167.3
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 165.4
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 164.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 162.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 161.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 161.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 160.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 158.9
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 158.5
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 158.0
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 156.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 156.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 147.4
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 146.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 139.8
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 137.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 105.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

562.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 562.0
FF:10169-103B7 60 years, female 640.8
FF:10153-102I9 76 years, female 483.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

334.4
Pig sample Sample description nTPM
Subiculum
nTPM: 272.3
Samples: 4

Max nTPM: 326.1
Min nTPM: 238.8
Sample A Female 326.1
Sample B Female 256.3
Sample C Male 238.8
Sample D Male 268.1
Dorsal hippocampus
nTPM: 334.4
Samples: 4

Max nTPM: 440.8
Min nTPM: 237.5
Sample A Female 440.8
Sample B Female 339.2
Sample C Male 320.2
Sample D Male 237.5
Entorhinal cortex
nTPM: 271.1
Samples: 4

Max nTPM: 349.4
Min nTPM: 211.6
Sample A Female 255.7
Sample B Female 349.4
Sample C Male 267.5
Sample D Male 211.6
Ventral hippocampus
nTPM: 279.5
Samples: 4

Max nTPM: 354.7
Min nTPM: 227.2
Sample A Female 354.7
Sample B Female 227.2
Sample C Male 258.6
Sample D Male 277.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

840.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 834.3
Samples: 4

Max nTPM: 903.1
Min nTPM: 775.0
Sample A Male 775.0
Sample B Male 856.2
Sample C Female 803.0
Sample D Female 903.1
Hippocampal formation
nTPM: 840.6
Samples: 4

Max nTPM: 892.4
Min nTPM: 753.1
Sample A Male 876.7
Sample B Male 840.3
Sample C Female 892.4
Sample D Female 753.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 27.6
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 28.1
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 27.2
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 26.4
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 26.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo