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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA035738
Antibody HPA035739
Glial cells
Low
Not detected
Neuronal cells
High
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
359.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 273.6
1898
Male, age 80, left hemisphere
385.7
1855
Male, age 76, left hemisphere
280.8
1911
Female, age 85, right hemisphere
257.7
2529
Female, age 94, left hemisphere
251.6
2621
Female, age 67, right hemisphere
250.7
2148
Female, age 91, left hemisphere
214.8
Dentate gyrus nTPM: 269.4
1927
Female, age 91, both hemispheres
316.9
2010
Male, age 76, both hemispheres
316.1
2528
Male, age 74, both hemispheres
267.7
2530
Female, age 94, left hemisphere
267.3
2246
Female, age 85, both hemispheres
255.1
2531
Female, age 67, both hemispheres
193.1
Entorhinal gyrus nTPM: 269.2
1938
Female, age 85, left hemisphere
336.2
2764
Male, age 80, right hemisphere
301.5
1787
Male, age 76, left hemisphere
273.7
2117
Female, age 91, right hemisphere
258.4
2686
Male, age 75, right hemisphere
231.0
2613
Female, age 94, left hemisphere
214.2
Hippocampus, CA1 nTPM: 303.4
2749
Male, age 80, left hemisphere
432.7
1873
Female, age 85, both hemispheres
311.2
2045
Male, age 76, both hemispheres
269.4
2527
Male, age 74, both hemispheres
263.7
2082
Female, age 91, right hemisphere
239.7
Hippocampus, CA2 nTPM: 293.9
1892
Male, age 76, both hemispheres
386.0
1963
Male, age 80, left hemisphere
326.0
2249
Male, age 74, both hemispheres
302.0
1940
Female, age 85, left hemisphere
269.6
2113
Female, age 91, right hemisphere
240.7
2437
Female, age 94, left hemisphere
239.2
Hippocampus, CA3 nTPM: 268.2
2137
Male, age 80, left hemisphere
375.8
1867
Male, age 76, both hemispheres
327.4
1891
Female, age 85, both hemispheres
285.1
2436
Male, age 74, both hemispheres
257.8
2620
Female, age 94, left hemisphere
190.7
2861
Female, age 67, both hemispheres
172.7
Parahippocampal cortex nTPM: 277.4
1850
Male, age 80, both hemispheres
413.2
1990
Female, age 91, right hemisphere
306.0
1933
Female, age 85, both hemispheres
305.6
2250
Female, age 67, right hemisphere
281.2
2018
Male, age 76, both hemispheres
280.3
2693
Female, age 94, both hemispheres
272.4
2245
Female, age 91, both hemispheres
259.8
2532
Female, age 72, left hemisphere
258.3
2692
Male, age 74, both hemispheres
218.0
2622
Female, age 67, right hemisphere
179.4
Perirhinal gyrus nTPM: 359.6
1841
Female, age 85, right hemisphere
398.9
1794
Male, age 80, right hemisphere
383.7
1847
Female, age 91, left hemisphere
379.0
2848
Male, age 76, right hemisphere
332.3
2521
Female, age 94, right hemisphere
304.2
Subiculum nTPM: 264.2
1901
Male, age 80, both hemispheres
317.9
1977
Female, age 85, both hemispheres
311.0
2042
Male, age 76, both hemispheres
260.3
2438
Female, age 94, left hemisphere
256.9
2729
Female, age 91, right hemisphere
230.5
2619
Male, age 74, both hemispheres
208.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
239.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 239.6
Samples: 255
Max nTPM: 433.3
Min nTPM: 105.8
Std nTPM: 56.3
Median nTPM: 234.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
433.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
420.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
416.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
397.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
393.7
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
386.7
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
379.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
376.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
370.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
363.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
358.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
346.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
344.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
339.3
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
337.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
336.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
334.6
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
331.1
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
329.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
322.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
322.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
320.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
318.9
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
316.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
316.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
315.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
313.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
306.8
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
306.7
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
306.0
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
304.9
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
304.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
303.7
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
303.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
303.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
301.5
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
299.6
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
293.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
292.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
292.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
291.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
291.2
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
290.8
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
288.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
284.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
284.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
283.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
283.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
282.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
281.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
281.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
280.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
280.7
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
279.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
279.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
277.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
277.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
276.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
275.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
274.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
273.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
273.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
272.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
270.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
269.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
269.2
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
269.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
268.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
268.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
267.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
266.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
265.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
265.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
264.3
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
263.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
262.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
261.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
260.2
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
258.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
258.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
258.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
258.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
257.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
257.4
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
256.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
256.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
255.4
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
252.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
252.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
252.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
251.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
251.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
251.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
251.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
250.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
250.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
250.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
250.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
248.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
247.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
246.2
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
245.9
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
245.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
245.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
244.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
242.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
242.1
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
242.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
241.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
241.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
240.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
240.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
240.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
240.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
239.9
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
239.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
239.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
239.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
238.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
238.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
238.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
237.6
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
237.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
237.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
236.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
236.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
235.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
234.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
234.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
234.5
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
234.0
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
233.9
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
233.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
232.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
232.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
232.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
231.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
231.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
231.1
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
231.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
230.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
229.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
228.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
228.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
225.1
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
225.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
224.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
223.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
223.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
222.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
222.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
220.1
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
219.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
219.1
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
219.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
219.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
218.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
217.5
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
216.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
216.3
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
216.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
215.4
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
215.3
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
214.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
214.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
213.7
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
212.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
211.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
211.0
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
210.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
209.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
209.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
209.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
208.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
208.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
206.4
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
206.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
205.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
204.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
204.3
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
202.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
202.1
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
201.4
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
200.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
200.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
199.9
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
199.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
199.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
198.7
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
198.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
198.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
197.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
195.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
193.4
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
193.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
192.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
191.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
191.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
191.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
190.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
190.5
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
190.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
190.4
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
190.2
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
190.0
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
188.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
187.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
186.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
186.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
185.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
184.9
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
184.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
184.7
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
184.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
184.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
184.2
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
183.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
183.0
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
182.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
182.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
182.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
182.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
181.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
179.9
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
179.4
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
179.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
177.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
176.9
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
175.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
174.6
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
174.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
174.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
172.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
172.0
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
171.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
170.8
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
169.2
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
169.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
167.3
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
165.4
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
164.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
162.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
161.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
161.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
160.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
158.9
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
158.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
158.0
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
156.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
156.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
147.4
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
146.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
139.8
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
137.6
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
105.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
334.4
Pig sample
Sample description
nTPM
Subiculum nTPM: 272.3
Samples: 4
Max nTPM: 326.1
Min nTPM: 238.8
Sample A
Female
326.1
Sample B
Female
256.3
Sample C
Male
238.8
Sample D
Male
268.1
Dorsal hippocampus nTPM: 334.4
Samples: 4
Max nTPM: 440.8
Min nTPM: 237.5
Sample A
Female
440.8
Sample B
Female
339.2
Sample C
Male
320.2
Sample D
Male
237.5
Entorhinal cortex nTPM: 271.1
Samples: 4
Max nTPM: 349.4
Min nTPM: 211.6
Sample A
Female
255.7
Sample B
Female
349.4
Sample C
Male
267.5
Sample D
Male
211.6
Ventral hippocampus nTPM: 279.5
Samples: 4
Max nTPM: 354.7
Min nTPM: 227.2
Sample A
Female
354.7
Sample B
Female
227.2
Sample C
Male
258.6
Sample D
Male
277.5
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
840.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 834.3
Samples: 4
Max nTPM: 903.1
Min nTPM: 775.0
Sample A
Male
775.0
Sample B
Male
856.2
Sample C
Female
803.0
Sample D
Female
903.1
Hippocampal formation nTPM: 840.6
Samples: 4
Max nTPM: 892.4
Min nTPM: 753.1
Sample A
Male
876.7
Sample B
Male
840.3
Sample C
Female
892.4
Sample D
Female
753.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.