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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:451.3 nTPM
HPA Brain:413.9 nTPM
GTEx:451.3 nTPM
FANTOM5:834.4 Scaled Tags Per Million
Pig:413.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 349.0
1981 Female, age 72, midline 438.6
2048 Male, age 55, midline 373.4
2816 Male, age 47, midline 324.2
2194 Female, age 79, both hemispheres 314.0
2565 Male, age 75, midline 294.7
Cervical spinal cord, dorsal horn
nTPM: 410.2
2296 Male, age 66, both hemispheres 550.3
2173 Female, age 72, unknown 509.9
2069 Male, age 47, both hemispheres 426.5
1877 Male, age 55, unknown 369.7
2297 Male, age 75, both hemispheres 336.1
2721 Male, age 90, both hemispheres 268.3
Cervical spinal cord, ventral horn
nTPM: 413.9
2480 Male, age 75, both hemispheres 567.2
2098 Female, age 72, unknown 449.3
2809 Male, age 90, both hemispheres 425.0
2295 Male, age 66, both hemispheres 395.6
2068 Male, age 55, unknown 356.6
2820 Female, age 79, both hemispheres 290.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

451.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 451.3
Samples: 204

Max nTPM: 884.7
Min nTPM: 198.5
Std nTPM: 124.6
Median nTPM: 445.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 884.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 796.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 768.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 726.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 707.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 705.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 701.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 693.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 687.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 662.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 656.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 647.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 643.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 636.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 635.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 633.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 631.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 629.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 629.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 628.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 622.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 619.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 619.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 618.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 607.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 607.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 606.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 604.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 601.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 599.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 589.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 578.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 576.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 573.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 568.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 568.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 565.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 561.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 559.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 558.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 557.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 555.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 551.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 548.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 543.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 541.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 539.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 539.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 534.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 533.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 532.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 530.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 530.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 529.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 528.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 525.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 525.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 523.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 516.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 513.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 512.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 511.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 502.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 501.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 500.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 500.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 500.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 498.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 497.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 495.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 493.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 490.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 486.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 485.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 485.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 482.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 482.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 477.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 475.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 474.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 474.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 471.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 471.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 471.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 468.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 468.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 467.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 466.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 466.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 464.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 461.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 460.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 459.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 457.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 456.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 454.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 454.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 452.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 451.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 450.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 450.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 446.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 444.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 443.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 442.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 442.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 441.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 440.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 437.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 435.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 433.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 427.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 427.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 425.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 424.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 423.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 420.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 416.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 415.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 415.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 408.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 403.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 402.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 401.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 400.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 400.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 399.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 398.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 395.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 393.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 393.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 391.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 390.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 389.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 389.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 388.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 388.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 388.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 385.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 383.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 382.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 379.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 379.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 374.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 373.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 372.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 370.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 369.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 369.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 369.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 366.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 365.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 364.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 360.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 355.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 350.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 349.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 349.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 348.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 344.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 344.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 343.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 341.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 340.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 340.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 338.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 337.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 336.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 333.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 331.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 329.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 329.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 328.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 327.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 327.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 325.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 325.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 324.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 324.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 319.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 312.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 312.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 305.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 303.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 293.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 292.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 289.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 283.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 282.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 273.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 271.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 270.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 270.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 268.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 265.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 239.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 233.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 233.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 225.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 219.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 207.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 205.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 203.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 198.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

834.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 834.4
FF:10181-103D1 60 years, female 838.5
FF:10159-103A6 76 years, female 830.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

413.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 342.7
Samples: 4

Max nTPM: 396.3
Min nTPM: 289.5
Sample A Female 328.1
Sample B Female 396.3
Sample C Male 356.7
Sample D Male 289.5
Ventral spinal cord
nTPM: 413.4
Samples: 4

Max nTPM: 444.0
Min nTPM: 376.9
Sample A Female 398.8
Sample B Female 444.0
Sample C Male 376.9
Sample D Male 433.7

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