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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

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  • SERINC1
BRAIN MIDBRAIN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Midbrain
Brain methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:317.8 nTPM
HPA Brain:363.9 nTPM
GTEx:317.8 nTPM
FANTOM5:724.3 Scaled Tags Per Million
Pig:356.0 nTPM
Mouse:739.0 nTPM
Allen mouse:24.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 305.1
2411 Female, age 72, unknown 367.8
1827 Male, age 72, unknown 354.6
1870 Female, age 42, unknown 354.2
2019 Male, age 18, unknown 306.7
2666 Male, age 74, left hemisphere 293.1
1833 Male, age 53, unknown 292.9
2828 Female, age 72, unknown 291.2
1830 Male, age 51, unknown 282.2
2586 Male, age 75, left hemisphere 257.9
2219 Male, age 76, both hemispheres 250.4
Dorsal raphe nucleus
nTPM: 318.0
2298 Female, age 72, unknown 371.5
2750 Male, age 76, both hemispheres 327.0
2047 Male, age 72, unknown 305.3
1828 Male, age 53, unknown 302.4
2016 Female, age 72, unknown 283.9
Inferior colliculus
nTPM: 306.0
2097 Female, age 72, unknown 364.7
1848 Female, age 42, unknown 307.1
1890 Male, age 53, unknown 282.1
2849 Male, age 72, unknown 269.9
Median raphe nucleus
nTPM: 333.5
2220 Male, age 76, midline 333.5
Periaquaductal grey, anterior
nTPM: 340.8
1947 Male, age 18, unknown 373.8
2502 Female, age 75, unknown 351.0
1795 Male, age 51, unknown 297.7
Periaquaductal grey, dorsal
nTPM: 284.2
1840 Male, age 53, unknown 296.5
2464 Female, age 72, unknown 289.4
1831 Male, age 72, unknown 288.9
2850 Male, age 76, both hemispheres 262.2
Periaquaductal grey, lateral
nTPM: 265.7
2053 Male, age 18, unknown 299.9
2272 Male, age 74, both hemispheres 261.8
2140 Male, age 76, both hemispheres 235.3
Pretectal area
nTPM: 336.3
1816 Male, age 51, unknown 403.3
2007 Male, age 72, unknown 384.8
1815 Male, age 53, unknown 364.9
1944 Female, age 72, unknown 362.7
1817 Female, age 42, unknown 360.7
2224 Female, age 72, unknown 332.0
2667 Female, age 75, unknown 325.7
2273 Male, age 74, both hemispheres 316.2
2825 Male, age 18, unknown 298.7
2407 Male, age 75, both hemispheres 289.5
2316 Male, age 76, right hemisphere 261.3
Red nucleus
nTPM: 309.7
1821 Female, age 72, unknown 407.6
2503 Female, age 72, unknown 338.2
1954 Female, age 42, unknown 321.6
1865 Male, age 51, unknown 317.2
1904 Male, age 53, unknown 312.1
2725 Female, age 75, unknown 298.7
2785 Male, age 18, unknown 292.7
2227 Male, age 72, unknown 291.0
2769 Male, age 72, unknown 290.1
2588 Male, age 74, left hemisphere 283.1
2584 Male, age 75, left hemisphere 282.8
2823 Male, age 76, right hemisphere 280.9
Substantia nigra
nTPM: 363.9
2241 Male, age 72, unknown 419.2
1941 Male, age 53, unknown 412.2
1889 Female, age 72, unknown 390.9
1916 Female, age 42, unknown 387.1
1851 Male, age 51, unknown 383.7
2409 Female, age 72, unknown 379.5
2665 Male, age 74, both hemispheres 341.1
2590 Female, age 75, unknown 323.2
2583 Male, age 75, right hemisphere 308.0
2699 Male, age 18, unknown 294.3
Superior colliculus
nTPM: 313.8
2668 Female, age 75, unknown 356.4
2261 Male, age 18, unknown 355.8
2587 Male, age 74, left hemisphere 346.3
2087 Female, age 72, unknown 344.4
1796 Male, age 53, unknown 312.0
1913 Female, age 42, unknown 305.5
1839 Male, age 51, unknown 293.9
1895 Male, age 76, right hemisphere 288.7
2664 Male, age 75, both hemispheres 278.5
1995 Male, age 72, unknown 256.8
Ventral tegmental area
nTPM: 340.8
2410 Female, age 72, unknown 382.7
2223 Female, age 72, unknown 360.8
1915 Female, age 42, unknown 343.6
1942 Male, age 51, unknown 333.8
2218 Male, age 76, both hemispheres 323.6
2021 Male, age 53, unknown 300.2

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 317.8
Samples: 183

Max nTPM: 746.0
Min nTPM: 137.3
Std nTPM: 87.7
Median nTPM: 299.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 746.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 633.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 633.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 589.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 555.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 483.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 482.9
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 475.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 465.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 461.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 448.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 442.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 436.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 436.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 436.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 429.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 424.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 423.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 417.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 417.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 406.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 406.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 405.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 404.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 402.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 401.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 401.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 400.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 399.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 398.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 394.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 394.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 392.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 388.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 388.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 384.1
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 381.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 379.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 379.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 376.2
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 374.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 373.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 372.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 371.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 371.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 369.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 368.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 364.4
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 362.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 362.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 361.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 361.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 359.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 358.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 350.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 348.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 346.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 345.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 344.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 343.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 341.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 341.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 340.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 339.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 331.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 331.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 329.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 325.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 325.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 324.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 322.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 319.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 318.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 316.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 316.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 316.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 315.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 314.5
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 313.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 310.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 309.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 309.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 308.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 307.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 307.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 307.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 303.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 302.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 302.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 301.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 300.1
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 299.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 298.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 297.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 296.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 296.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 295.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 295.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 295.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 294.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 294.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 293.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 291.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 288.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 288.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 287.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 286.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 286.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 285.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 284.8
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 284.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 283.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 283.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 283.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 282.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 280.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 280.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 279.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 279.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 279.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 277.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 277.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 276.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 276.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 274.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 273.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 273.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 272.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 270.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 266.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 265.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 265.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 261.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 260.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 259.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 259.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 259.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 258.1
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 258.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 257.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 257.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 255.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 255.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 252.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 250.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 250.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 249.1
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 248.2
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 248.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 247.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 244.3
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 243.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 242.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 241.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 239.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 237.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 237.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 233.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 232.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 230.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 229.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 228.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 227.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 225.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 225.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 223.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 222.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 222.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 216.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 215.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 214.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 212.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 211.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 211.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 210.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 209.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 202.0
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 194.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 189.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 184.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 169.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 167.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 137.3
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

724.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 724.3
FF:10158-103A5 76 years, female 724.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

356.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 340.4
Samples: 4

Max nTPM: 449.4
Min nTPM: 252.1
Sample A Female 449.4
Sample B Female 317.5
Sample C Male 342.4
Sample D Male 252.1
Midbrain
nTPM: 356.0
Samples: 4

Max nTPM: 414.8
Min nTPM: 284.0
Sample A Female 414.8
Sample B Female 363.7
Sample C Male 361.3
Sample D Male 284.0
Periaqueductal gray
nTPM: 264.6
Samples: 3

Max nTPM: 278.8
Min nTPM: 239.0
Sample B Female 278.8
Sample C Male 275.9
Sample D Male 239.0
Superior colliculi
nTPM: 338.5
Samples: 4

Max nTPM: 392.4
Min nTPM: 296.9
Sample A Female 362.4
Sample B Female 302.1
Sample C Male 392.4
Sample D Male 296.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

739.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 739.0
Samples: 4

Max nTPM: 775.6
Min nTPM: 695.5
Sample A Male 695.5
Sample B Male 752.6
Sample C Female 775.6
Sample D Female 732.2

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.4
67752306 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 26.2
77620375 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 22.6
77413696 Antisense, RP_070205_01_D08, Mouse strain C57BL/6J (56 days, male) 21.9
68196968 Antisense, RP_040922_01_D04, Mouse strain C57BL/6J (56 days, male) 20.9

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