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  • RPS15
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1542.6 nTPM
HPA Brain:608.0 nTPM
GTEx:1542.6 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Mouse:2116.2 nTPM
Allen mouse:9.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

608.0
Sample id Sample description nTPM
Amygdala
nTPM: 590.9
2695 Female, age 67, right hemisphere 710.1
2514 Male, age 75, right hemisphere 588.2
2517 Female, age 94, left hemisphere 560.1
2814 Male, age 76, right hemisphere 555.6
1987 Female, age 91, left hemisphere 540.5
Basal amygdala
nTPM: 534.6
2827 Female, age 67, right hemisphere 702.5
2609 Male, age 75, right hemisphere 592.3
2110 Male, age 80, left hemisphere 514.3
2685 Female, age 94, left hemisphere 512.3
2243 Female, age 91, right hemisphere 447.9
1955 Male, age 76, both hemispheres 438.5
Central amygdala
nTPM: 588.2
2826 Female, age 94, left hemisphere 913.8
2515 Male, age 75, right hemisphere 637.2
1905 Male, age 76, both hemispheres 489.7
2239 Male, age 80, left hemisphere 477.2
2701 Female, age 91, right hemisphere 422.9
Corticomedial amygdala
nTPM: 475.6
2535 Female, age 67, right hemisphere 588.4
2428 Male, age 75, right hemisphere 523.3
2829 Male, age 80, left hemisphere 493.6
2242 Female, age 91, right hemisphere 438.8
2429 Female, age 94, left hemisphere 422.4
2240 Male, age 76, both hemispheres 386.8
Lateral amygdala
nTPM: 608.0
2830 Female, age 67, right hemisphere 871.3
2516 Male, age 75, right hemisphere 689.5
2534 Female, age 94, left hemisphere 671.1
2256 Male, age 80, left hemisphere 524.0
2255 Female, age 91, right hemisphere 469.7
1883 Male, age 76, both hemispheres 422.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1542.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1542.6
Samples: 181

Max nTPM: 3883.1
Min nTPM: 767.1
Std nTPM: 551.9
Median nTPM: 1409.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3883.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3729.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3477.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3302.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3176.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3156.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2893.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2796.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2744.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2570.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2535.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2487.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2406.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2393.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2361.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2339.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2318.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2309.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2251.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2208.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2206.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2194.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2159.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2158.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2103.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2100.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2011.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1990.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1950.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1943.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1935.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1871.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1870.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1852.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1846.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1841.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1831.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1827.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1802.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1797.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1792.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1763.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1758.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1755.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1753.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1731.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1730.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1719.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1718.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1716.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1715.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1693.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1673.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1666.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1635.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1635.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1632.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1630.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1596.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1593.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1568.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1564.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1559.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1554.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1536.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1526.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1521.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1507.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1504.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1501.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1500.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1496.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1488.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1486.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1473.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1469.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1463.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1462.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1452.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1451.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1450.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1448.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1444.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1437.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1430.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1422.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1420.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1416.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1414.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1410.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1409.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1407.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1407.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1403.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1403.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1402.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1402.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1394.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1391.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1388.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1381.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1376.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1375.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1362.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1352.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1345.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1338.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1338.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1337.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1333.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1318.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1309.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1306.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1300.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1296.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1289.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1279.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1278.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1276.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1271.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1269.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1262.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1261.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1256.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1254.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1247.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1246.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1245.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1230.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1211.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1211.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1209.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1208.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1206.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1194.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1193.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1173.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1159.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1157.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1154.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1153.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1145.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1144.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1137.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1130.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1125.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1124.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1123.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1122.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1120.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1105.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1099.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1091.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1079.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1074.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1071.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1060.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1039.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1033.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1031.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1026.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1019.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1018.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1018.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1017.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1013.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 980.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 967.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 956.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 941.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 937.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 912.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 901.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 900.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 882.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 882.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 852.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 843.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 799.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 788.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 767.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.0
FF:10151-102I7 76 years, female 46.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2116.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 2116.2
Samples: 4

Max nTPM: 2250.0
Min nTPM: 1969.6
Sample A Male 1969.6
Sample B Male 2194.6
Sample C Female 2250.0
Sample D Female 2050.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.5
68321982 Antisense, RP_041207_01_B08, Mouse strain C57BL/6J (56 days, male) 9.6
75774687 Antisense, RP_060530_01_D12, Mouse strain C57BL/6J (56 days, male) 9.5

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