On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1542.6
nTPM
HPA Brain:
610.3
nTPM
GTEx:
1542.6
nTPM
FANTOM5:
46.0
Scaled Tags Per Million
Mouse:
1353.0
nTPM
Rat:
464.3
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
610.3
Sample id
Sample description
nTPM
Basal amygdala nTPM: 536.9
2827
Female, age 67, right hemisphere
706.2
2609
Male, age 75, right hemisphere
593.4
2110
Male, age 80, left hemisphere
516.8
2685
Female, age 94, left hemisphere
515.2
2243
Female, age 91, right hemisphere
449.9
1955
Male, age 76, both hemispheres
439.8
Central amygdala nTPM: 590.5
2826
Female, age 94, left hemisphere
919.0
2515
Male, age 75, right hemisphere
638.3
1905
Male, age 76, both hemispheres
491.2
2239
Male, age 80, left hemisphere
479.1
2701
Female, age 91, right hemisphere
425.1
Corticomedial amygdala nTPM: 477.4
2535
Female, age 67, right hemisphere
591.2
2428
Male, age 75, right hemisphere
524.0
2829
Male, age 80, left hemisphere
495.9
2242
Female, age 91, right hemisphere
440.8
2429
Female, age 94, left hemisphere
424.4
2240
Male, age 76, both hemispheres
388.3
Lateral amygdala nTPM: 610.3
2830
Female, age 67, right hemisphere
875.2
2516
Male, age 75, right hemisphere
690.7
2534
Female, age 94, left hemisphere
674.5
2256
Male, age 80, left hemisphere
526.3
2255
Female, age 91, right hemisphere
471.5
1883
Male, age 76, both hemispheres
423.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1542.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1542.6
Samples: 181
Max nTPM: 3883.1
Min nTPM: 767.1
Std nTPM: 551.9
Median nTPM: 1409.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
3883.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
3729.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
3477.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
3302.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
3176.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3156.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2893.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
2796.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
2744.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2570.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
2535.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2487.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
2406.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
2393.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
2361.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
2339.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
2318.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
2309.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
2251.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
2208.8
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
2206.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
2194.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
2159.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
2158.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
2103.3
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
2100.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
2011.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1990.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
1950.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1943.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1935.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
1871.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
1870.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1852.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
1846.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
1841.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
1831.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1827.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
1802.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
1797.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1792.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
1763.6
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
1758.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
1755.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
1753.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1731.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1730.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1719.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
1718.2
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
1716.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1715.0
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
1693.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1673.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1666.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1635.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
1635.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
1632.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1630.8
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1596.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1593.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
1568.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1564.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
1559.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1554.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1536.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
1526.5
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
1521.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1507.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
1504.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
1501.6
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
1500.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
1496.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1488.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1486.2
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1473.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1469.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
1463.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1462.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1452.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1451.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1450.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
1448.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
1444.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1437.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1430.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1422.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1420.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
1416.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1414.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
1410.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1409.0
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
1407.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1407.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
1403.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
1403.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
1402.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1402.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
1394.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
1391.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
1388.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1381.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1376.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1375.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
1362.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
1352.4
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1345.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1338.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1338.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1337.5
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
1333.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1318.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
1309.8
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
1306.6
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
1300.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1296.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
1289.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1279.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
1278.3
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
1276.4
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
1271.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1269.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
1262.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
1261.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1256.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1254.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1247.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
1246.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1245.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1230.0
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
1211.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
1211.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
1209.7
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
1208.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
1206.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
1194.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
1193.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1173.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1159.3
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1157.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
1154.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
1153.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
1145.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1144.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
1137.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1130.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
1125.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1124.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1123.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
1122.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
1120.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
1105.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
1099.2
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1091.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
1079.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
1074.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
1071.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
1060.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1039.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
1033.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
1031.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1026.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
1019.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
1018.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
1018.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
1017.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1013.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
980.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
967.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
956.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
941.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
937.0
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
912.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
901.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
900.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
882.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
882.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
852.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
843.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
799.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
788.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
767.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1353.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1353.0
Samples: 4
Max nTPM: 1461.3
Min nTPM: 1182.1
Sample A
1461.3
Sample B
1350.5
Sample C
1418.1
Sample D
1182.1
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
464.3
Rat sample
Sample description
nTPM
Amygdala nTPM: 464.3
Samples: 4
Max nTPM: 513.8
Min nTPM: 414.3
Sample A
491.1
Sample A
513.8
Sample A
438.0
Sample A
414.3
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The Human Protein Atlas project is funded
