MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:157.8 nTPM
HPA Brain:189.2 nTPM
GTEx:157.8 nTPM
FANTOM5:370.8 Scaled Tags Per Million
Pig:290.0 nTPM
Mouse:92.8 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.5
2586 Male, age 75, left hemisphere 155.7
2828 Female, age 72, unknown 151.2
1870 Female, age 42, unknown 145.6
1833 Male, age 53, unknown 125.3
1827 Male, age 72, unknown 120.2
1830 Male, age 51, unknown 111.0
2411 Female, age 72, unknown 102.3
2666 Male, age 74, left hemisphere 92.1
2019 Male, age 18, unknown 89.1
2219 Male, age 76, both hemispheres 72.4
Dorsal raphe nucleus
nTPM: 162.3
2016 Female, age 72, unknown 203.4
2298 Female, age 72, unknown 179.5
1828 Male, age 53, unknown 168.8
2047 Male, age 72, unknown 147.9
2750 Male, age 76, both hemispheres 111.8
Inferior colliculus
nTPM: 147.3
1848 Female, age 42, unknown 165.3
2849 Male, age 72, unknown 151.9
2097 Female, age 72, unknown 144.2
1890 Male, age 53, unknown 127.8
Median raphe nucleus
nTPM: 131.9
2220 Male, age 76, midline 131.9
Periaquaductal grey, anterior
nTPM: 150.0
1795 Male, age 51, unknown 156.8
1947 Male, age 18, unknown 154.5
2502 Female, age 75, unknown 138.8
Periaquaductal grey, dorsal
nTPM: 176.8
2850 Male, age 76, both hemispheres 234.9
1840 Male, age 53, unknown 184.3
1831 Male, age 72, unknown 149.2
2464 Female, age 72, unknown 138.7
Periaquaductal grey, lateral
nTPM: 189.2
2140 Male, age 76, both hemispheres 207.8
2053 Male, age 18, unknown 186.0
2272 Male, age 74, both hemispheres 173.9
Pretectal area
nTPM: 142.7
2273 Male, age 74, both hemispheres 219.1
2224 Female, age 72, unknown 185.6
2316 Male, age 76, right hemisphere 158.2
2825 Male, age 18, unknown 155.7
2667 Female, age 75, unknown 149.2
1944 Female, age 72, unknown 131.4
2407 Male, age 75, both hemispheres 130.9
1817 Female, age 42, unknown 127.6
1815 Male, age 53, unknown 116.3
1816 Male, age 51, unknown 111.6
2007 Male, age 72, unknown 83.8
Red nucleus
nTPM: 130.7
2725 Female, age 75, unknown 163.3
1954 Female, age 42, unknown 157.0
1821 Female, age 72, unknown 153.4
2769 Male, age 72, unknown 145.7
1865 Male, age 51, unknown 143.8
2503 Female, age 72, unknown 142.5
2227 Male, age 72, unknown 142.1
1904 Male, age 53, unknown 129.5
2823 Male, age 76, right hemisphere 127.0
2785 Male, age 18, unknown 94.5
2584 Male, age 75, left hemisphere 85.4
2588 Male, age 74, left hemisphere 84.5
Substantia nigra
nTPM: 141.4
2699 Male, age 18, unknown 230.7
1916 Female, age 42, unknown 173.1
2241 Male, age 72, unknown 159.0
1851 Male, age 51, unknown 148.2
2409 Female, age 72, unknown 135.8
1889 Female, age 72, unknown 127.5
1941 Male, age 53, unknown 120.9
2590 Female, age 75, unknown 117.1
2665 Male, age 74, both hemispheres 101.6
2583 Male, age 75, right hemisphere 99.6
Superior colliculus
nTPM: 133.0
1995 Male, age 72, unknown 167.7
1796 Male, age 53, unknown 152.4
1913 Female, age 42, unknown 147.5
2587 Male, age 74, left hemisphere 139.1
1839 Male, age 51, unknown 134.5
2087 Female, age 72, unknown 128.2
2664 Male, age 75, both hemispheres 121.8
2668 Female, age 75, unknown 120.7
2261 Male, age 18, unknown 117.4
1895 Male, age 76, right hemisphere 100.8
Ventral tegmental area
nTPM: 141.1
1915 Female, age 42, unknown 166.0
2021 Male, age 53, unknown 148.3
2218 Male, age 76, both hemispheres 137.3
1942 Male, age 51, unknown 136.6
2223 Female, age 72, unknown 136.2
2410 Female, age 72, unknown 122.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 157.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 157.8
Samples: 183

Max nTPM: 670.8
Min nTPM: 37.5
Std nTPM: 85.9
Median nTPM: 134.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 670.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 550.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 425.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 381.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 375.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 369.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 352.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 338.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 337.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 335.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 328.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 370.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 370.8
FF:10158-103A5 76 years, female 370.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 290.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 286.2
Samples: 4

Max nTPM: 313.7
Min nTPM: 254.0
Sample A Female 313.7
Sample B Female 278.6
Sample C Male 254.0
Sample D Male 298.5
Midbrain
nTPM: 290.0
Samples: 4

Max nTPM: 552.2
Min nTPM: 167.2
Sample A Female 552.2
Sample B Female 252.9
Sample C Male 187.5
Sample D Male 167.2
Periaqueductal gray
nTPM: 268.4
Samples: 3

Max nTPM: 301.2
Min nTPM: 249.9
Sample B Female 249.9
Sample C Male 301.2
Sample D Male 254.1
Superior colliculi
nTPM: 213.1
Samples: 4

Max nTPM: 246.6
Min nTPM: 187.8
Sample A Female 246.6
Sample B Female 187.8
Sample C Male 211.5
Sample D Male 206.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.8
Samples: 4

Max nTPM: 99.8
Min nTPM: 88.1
Sample A Male 99.8
Sample B Male 91.6
Sample C Female 88.1
Sample D Female 91.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
74822928 Antisense, RP_060321_01_A01, Mouse strain C57BL/6J (56 days, male) 1.8

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