On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1854.7
nTPM
HPA Brain:
239.4
nTPM
GTEx:
1854.7
nTPM
FANTOM5:
883.0
Scaled Tags Per Million
Macaque:
322.6
nTPM
Mouse:
461.0
nTPM
Pig:
319.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
239.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 204.4
1870
Female, age 42, unknown
239.7
2666
Male, age 74, left hemisphere
230.3
2586
Male, age 75, left hemisphere
221.4
2019
Male, age 18, unknown
207.3
2411
Female, age 72, unknown
203.9
2828
Female, age 72, unknown
200.8
1830
Male, age 51, unknown
200.6
1827
Male, age 72, unknown
195.5
1833
Male, age 53, unknown
188.5
2219
Male, age 76, both hemispheres
156.2
Dorsal raphe nucleus nTPM: 211.8
2016
Female, age 72, unknown
243.7
2298
Female, age 72, unknown
225.9
2750
Male, age 76, both hemispheres
204.0
1828
Male, age 53, unknown
202.9
2047
Male, age 72, unknown
182.7
Inferior colliculus nTPM: 214.7
2097
Female, age 72, unknown
228.6
1890
Male, age 53, unknown
220.4
2849
Male, age 72, unknown
217.3
1848
Female, age 42, unknown
192.5
Median raphe nucleus nTPM: 194.1
2220
Male, age 76, midline
194.1
Periaquaductal grey, anterior nTPM: 212.4
2502
Female, age 75, unknown
248.8
1795
Male, age 51, unknown
199.2
1947
Male, age 18, unknown
189.1
Periaquaductal grey, dorsal nTPM: 194.2
1840
Male, age 53, unknown
216.5
2850
Male, age 76, both hemispheres
196.9
1831
Male, age 72, unknown
185.2
2464
Female, age 72, unknown
178.3
Periaquaductal grey, lateral nTPM: 206.1
2053
Male, age 18, unknown
252.5
2140
Male, age 76, both hemispheres
201.3
2272
Male, age 74, both hemispheres
164.5
Pretectal area nTPM: 193.5
2316
Male, age 76, right hemisphere
220.4
1815
Male, age 53, unknown
207.0
2825
Male, age 18, unknown
201.3
2224
Female, age 72, unknown
196.6
1817
Female, age 42, unknown
195.7
2007
Male, age 72, unknown
193.9
2407
Male, age 75, both hemispheres
191.4
1944
Female, age 72, unknown
189.9
1816
Male, age 51, unknown
183.2
2273
Male, age 74, both hemispheres
176.5
2667
Female, age 75, unknown
172.4
Red nucleus nTPM: 222.6
2503
Female, age 72, unknown
267.1
1821
Female, age 72, unknown
248.6
1865
Male, age 51, unknown
242.7
2725
Female, age 75, unknown
228.2
1904
Male, age 53, unknown
225.4
2227
Male, age 72, unknown
224.1
2584
Male, age 75, left hemisphere
222.5
2769
Male, age 72, unknown
218.0
1954
Female, age 42, unknown
210.3
2588
Male, age 74, left hemisphere
205.5
2823
Male, age 76, right hemisphere
193.9
2785
Male, age 18, unknown
185.3
Substantia nigra nTPM: 239.4
2699
Male, age 18, unknown
297.5
1851
Male, age 51, unknown
284.6
2665
Male, age 74, both hemispheres
279.8
2409
Female, age 72, unknown
252.6
2241
Male, age 72, unknown
249.7
1916
Female, age 42, unknown
242.4
2590
Female, age 75, unknown
209.9
1889
Female, age 72, unknown
207.4
1941
Male, age 53, unknown
192.7
2583
Male, age 75, right hemisphere
177.0
Superior colliculus nTPM: 213.6
2587
Male, age 74, left hemisphere
254.9
1995
Male, age 72, unknown
247.8
1913
Female, age 42, unknown
229.3
2664
Male, age 75, both hemispheres
222.7
2668
Female, age 75, unknown
219.6
1796
Male, age 53, unknown
213.2
1839
Male, age 51, unknown
193.8
2087
Female, age 72, unknown
193.4
1895
Male, age 76, right hemisphere
191.4
2261
Male, age 18, unknown
169.5
Ventral tegmental area nTPM: 222.6
1915
Female, age 42, unknown
269.2
2223
Female, age 72, unknown
240.9
2021
Male, age 53, unknown
239.9
1942
Male, age 51, unknown
206.3
2410
Female, age 72, unknown
200.8
2218
Male, age 76, both hemispheres
178.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1854.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1854.7
Samples: 183
Max nTPM: 4544.8
Min nTPM: 579.6
Std nTPM: 706.4
Median nTPM: 1702.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4544.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4399.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4373.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3540.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3505.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
3388.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
3236.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3216.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3182.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3142.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
3073.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3071.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3042.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2912.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2882.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2871.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
2797.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2779.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2778.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2776.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2760.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2751.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2732.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2683.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2654.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
2646.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
2636.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2612.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2556.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2531.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
2530.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2483.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
2459.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2457.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2443.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2392.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2381.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
2379.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2371.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
2367.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2365.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2364.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2326.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2255.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2249.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
2241.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
2234.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2231.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2195.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2194.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2188.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2178.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2166.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2105.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2100.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2090.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2066.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
2056.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2051.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2047.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2044.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
2012.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2006.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1977.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1976.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1970.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1968.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1958.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1951.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1944.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1933.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1923.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1917.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1914.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1911.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1901.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1886.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1868.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1851.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1839.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1817.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1811.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1799.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1786.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1765.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1762.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1756.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1754.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1737.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1734.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1720.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1702.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1690.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1686.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1680.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1679.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1671.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1663.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1662.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1662.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1658.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1651.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1645.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1623.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1614.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1599.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1598.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1578.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1564.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1561.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1560.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1533.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1526.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1520.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1515.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1509.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1479.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1476.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1455.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1452.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1448.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1445.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1439.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1431.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1425.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1417.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1401.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1400.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1392.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1381.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1373.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1373.7
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1367.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1363.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1353.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1352.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1352.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1347.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1336.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1323.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1302.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1300.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1300.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1293.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1293.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1291.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1288.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1281.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1272.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1268.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1259.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1235.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1229.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1215.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1211.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1183.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1178.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1175.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1169.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1158.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1156.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1150.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1149.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1118.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1115.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1091.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1071.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1068.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1058.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1057.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1020.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1017.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1006.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
993.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
941.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
904.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
897.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
875.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
871.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
819.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
726.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
594.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
579.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
322.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 322.6
Samples: 1
Max nTPM: 322.6
Min nTPM: 322.6
Sample A
322.6
Midbrain nTPM: 267.2
Samples: 1
Max nTPM: 267.2
Min nTPM: 267.2
Sample A
267.2
Superior colliculi nTPM: 198.1
Samples: 1
Max nTPM: 198.1
Min nTPM: 198.1
Sample A
198.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
319.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 319.1
Samples: 3
Max nTPM: 397.9
Min nTPM: 229.7
Sample A
Female
397.9
Sample B
Female
329.7
Sample C
Male
229.7
Midbrain nTPM: 233.0
Samples: 3
Max nTPM: 297.3
Min nTPM: 191.6
Sample B
Female
297.3
Sample C
Male
210.1
Sample D
Male
191.6
Periaqueductal gray nTPM: 223.6
Samples: 3
Max nTPM: 229.7
Min nTPM: 219.5
Sample B
Female
229.7
Sample C
Male
221.6
Sample D
Male
219.5
Superior colliculi nTPM: 299.2
Samples: 4
Max nTPM: 366.8
Min nTPM: 248.3
Sample A
Female
366.8
Sample B
Female
306.8
Sample C
Male
274.8
Sample D
Male
248.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
461.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 461.0
Samples: 4
Max nTPM: 504.4
Min nTPM: 413.2
Sample A
504.4
Sample B
413.2
Sample C
434.8
Sample D
491.5
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The Human Protein Atlas project is funded
