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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:6088.1 nTPM
HPA Brain:4972.2 nTPM
GTEx:6088.1 nTPM
FANTOM5:4997.9 Scaled Tags Per Million
Pig:3350.3 nTPM
Mouse:1117.8 nTPM
Allen mouse:16.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4972.2
Sample id Sample description nTPM
Amygdala
nTPM: 4972.2
1987 Female, age 91, left hemisphere 6226.2
2514 Male, age 75, right hemisphere 4931.7
2814 Male, age 76, right hemisphere 4665.1
2517 Female, age 94, left hemisphere 4662.0
2695 Female, age 67, right hemisphere 4376.1
Basal amygdala
nTPM: 3518.4
2243 Female, age 91, right hemisphere 4614.3
2110 Male, age 80, left hemisphere 4162.0
1955 Male, age 76, both hemispheres 4133.3
2609 Male, age 75, right hemisphere 3802.9
2685 Female, age 94, left hemisphere 3185.5
2827 Female, age 67, right hemisphere 1212.3
Central amygdala
nTPM: 4464.1
2515 Male, age 75, right hemisphere 5920.4
1905 Male, age 76, both hemispheres 4777.8
2826 Female, age 94, left hemisphere 4168.4
2239 Male, age 80, left hemisphere 3943.3
2701 Female, age 91, right hemisphere 3510.9
Corticomedial amygdala
nTPM: 3824.4
2242 Female, age 91, right hemisphere 5801.7
2829 Male, age 80, left hemisphere 4214.4
2240 Male, age 76, both hemispheres 3885.3
2428 Male, age 75, right hemisphere 3698.9
2429 Female, age 94, left hemisphere 3339.9
2535 Female, age 67, right hemisphere 2006.1
Lateral amygdala
nTPM: 3108.8
1883 Male, age 76, both hemispheres 3964.3
2534 Female, age 94, left hemisphere 3631.0
2256 Male, age 80, left hemisphere 3463.2
2516 Male, age 75, right hemisphere 3329.1
2255 Female, age 91, right hemisphere 3294.9
2830 Female, age 67, right hemisphere 970.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6088.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 6088.1
Samples: 181

Max nTPM: 20942.1
Min nTPM: 561.9
Std nTPM: 2982.4
Median nTPM: 5811.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20942.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 14499.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14391.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 13669.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 13629.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 13256.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 12706.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 12245.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 11892.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 11349.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 11214.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 11076.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 10717.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 10550.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 10526.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 10151.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 10088.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 9974.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 9839.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 9761.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 9670.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 9510.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 9470.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 9468.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 9298.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 8968.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 8934.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 8677.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 8670.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 8560.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 8531.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 8357.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 8340.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 8217.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 8040.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 8001.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 7874.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 7872.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 7846.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 7832.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7830.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 7656.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 7644.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 7522.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 7486.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 7300.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 7259.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 7217.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 7176.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 7035.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 6990.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6969.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 6944.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 6943.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 6929.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6874.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6852.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6822.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 6797.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 6790.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6768.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 6710.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 6668.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 6667.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 6639.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 6621.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6603.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 6592.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 6498.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 6458.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 6413.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6404.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6381.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 6374.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 6352.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 6337.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 6312.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 6293.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 6230.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 6219.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 6144.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 6066.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 6035.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 5986.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 5983.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 5958.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 5929.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5909.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 5847.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 5840.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 5811.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 5753.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 5718.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 5631.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 5601.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 5598.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 5558.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5519.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5509.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5449.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 5402.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5346.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5300.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 5294.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 5277.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 5232.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 5188.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5153.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5139.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 5096.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 5085.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 5048.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 4955.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 4940.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 4938.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4931.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 4917.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 4895.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 4894.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 4860.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 4857.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 4773.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 4751.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4680.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4672.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 4638.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4507.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4485.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 4438.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 4432.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 4421.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 4373.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4290.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 4237.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 4184.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4153.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4144.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4106.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 4089.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 3991.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 3909.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 3734.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 3708.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 3547.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3541.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 3530.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 3518.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 3400.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 3385.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3357.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 3325.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 3317.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3201.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3185.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 3158.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2965.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2947.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2925.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2923.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2873.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2809.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2752.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2720.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2632.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2459.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2353.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2334.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2317.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2270.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2258.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2236.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2187.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2159.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1789.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1637.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1509.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1473.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1369.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1339.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1119.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 561.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4997.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 4997.9
FF:10151-102I7 76 years, female 4997.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3350.3
Pig sample Sample description nTPM
Amygdala
nTPM: 3350.3
Samples: 4

Max nTPM: 3703.0
Min nTPM: 2991.0
Sample A Female 3703.0
Sample B Female 3231.4
Sample C Male 3475.8
Sample D Male 2991.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1117.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 1117.8
Samples: 4

Max nTPM: 1244.3
Min nTPM: 998.3
Sample A Male 998.3
Sample B Male 1048.9
Sample C Female 1244.3
Sample D Female 1179.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.4
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 23.5
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 18.6
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 9.3
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 4.2

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