HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:4454.5 nTPM
HPA Brain:4776.4 nTPM
GTEx:4454.5 nTPM
FANTOM5:5918.9 Scaled Tags Per Million
Pig:4172.3 nTPM
Mouse:1082.3 nTPM
Allen mouse:16.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000572Antibody CAB016253Antibody CAB080180
Glial cells Not detectedLowHigh
Neuronal cells MediumMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 4776.4
Sample id Sample description nTPM
Hippocampus
nTPM: 4776.4
2529 Female, age 94, left hemisphere 5925.8
1898 Male, age 80, left hemisphere 5098.0
2148 Female, age 91, left hemisphere 4942.6
2621 Female, age 67, right hemisphere 4462.9
1911 Female, age 85, right hemisphere 4260.6
1855 Male, age 76, left hemisphere 3968.9
Dentate gyrus
nTPM: 3929.8
2528 Male, age 74, both hemispheres 5619.2
2530 Female, age 94, left hemisphere 4269.4
2246 Female, age 85, both hemispheres 4189.0
2010 Male, age 76, both hemispheres 3456.7
1927 Female, age 91, both hemispheres 3241.4
2531 Female, age 67, both hemispheres 2803.4
Entorhinal gyrus
nTPM: 3780.2
2117 Female, age 91, right hemisphere 5940.6
1938 Female, age 85, left hemisphere 4545.0
1787 Male, age 76, left hemisphere 3543.2
2764 Male, age 80, right hemisphere 3445.8
2613 Female, age 94, left hemisphere 2773.4
2686 Male, age 75, right hemisphere 2433.1
Hippocampus, CA1
nTPM: 4036.3
2527 Male, age 74, both hemispheres 6188.7
1873 Female, age 85, both hemispheres 4206.3
2082 Female, age 91, right hemisphere 4034.5
2749 Male, age 80, left hemisphere 3481.1
2045 Male, age 76, both hemispheres 2271.1
Hippocampus, CA2
nTPM: 4247.1
2249 Male, age 74, both hemispheres 6544.4
2113 Female, age 91, right hemisphere 4531.0
1940 Female, age 85, left hemisphere 4201.6
2437 Female, age 94, left hemisphere 4057.7
1963 Male, age 80, left hemisphere 3375.8
1892 Male, age 76, both hemispheres 2771.9
Hippocampus, CA3
nTPM: 3832.7
2436 Male, age 74, both hemispheres 6113.7
2620 Female, age 94, left hemisphere 4273.4
1891 Female, age 85, both hemispheres 3759.9
2137 Male, age 80, left hemisphere 3302.2
1867 Male, age 76, both hemispheres 2822.5
2861 Female, age 67, both hemispheres 2724.8
Parahippocampal cortex
nTPM: 3821.3
2250 Female, age 67, right hemisphere 5215.5
1933 Female, age 85, both hemispheres 4253.9
2245 Female, age 91, both hemispheres 4251.9
1850 Male, age 80, both hemispheres 4001.7
2622 Female, age 67, right hemisphere 3958.8
1990 Female, age 91, right hemisphere 3858.3
2692 Male, age 74, both hemispheres 3640.5
2532 Female, age 72, left hemisphere 3381.6
2018 Male, age 76, both hemispheres 2891.2
2693 Female, age 94, both hemispheres 2759.9
Perirhinal gyrus
nTPM: 3788.1
1794 Male, age 80, right hemisphere 4517.4
1847 Female, age 91, left hemisphere 4366.9
1841 Female, age 85, right hemisphere 4153.7
2521 Female, age 94, right hemisphere 3279.7
2848 Male, age 76, right hemisphere 2622.9
Subiculum
nTPM: 4091.7
2729 Female, age 91, right hemisphere 5549.7
2619 Male, age 74, both hemispheres 5112.0
1901 Male, age 80, both hemispheres 3640.8
1977 Female, age 85, both hemispheres 3554.5
2438 Female, age 94, left hemisphere 3546.1
2042 Male, age 76, both hemispheres 3147.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 4454.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4454.5
Samples: 255

Max nTPM: 15304.7
Min nTPM: 891.2
Std nTPM: 2149.8
Median nTPM: 4138.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 15304.7
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 11662.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 11031.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 10811.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 10702.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 10538.6
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 9566.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 9292.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 9271.4
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 8583.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 8346.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5918.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5918.9
FF:10169-103B7 60 years, female 6111.0
FF:10153-102I9 76 years, female 5726.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 4172.3
Pig sample Sample description nTPM
Subiculum
nTPM: 4172.3
Samples: 4

Max nTPM: 4724.2
Min nTPM: 3799.5
Sample A Female 4724.2
Sample B Female 4177.4
Sample C Male 3799.5
Sample D Male 3988.0
Dorsal hippocampus
nTPM: 3372.2
Samples: 4

Max nTPM: 4160.5
Min nTPM: 2828.3
Sample A Female 3489.5
Sample B Female 3010.3
Sample C Male 4160.5
Sample D Male 2828.3
Entorhinal cortex
nTPM: 3718.5
Samples: 4

Max nTPM: 4393.8
Min nTPM: 3017.4
Sample A Female 3734.5
Sample B Female 3728.2
Sample C Male 4393.8
Sample D Male 3017.4
Ventral hippocampus
nTPM: 3844.3
Samples: 4

Max nTPM: 5366.4
Min nTPM: 3247.9
Sample A Female 3491.6
Sample B Female 3271.2
Sample C Male 5366.4
Sample D Male 3247.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1082.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1002.0
Samples: 4

Max nTPM: 1082.0
Min nTPM: 885.6
Sample A Male 1054.5
Sample B Male 885.6
Sample C Female 1082.0
Sample D Female 985.8
Hippocampal formation
nTPM: 1082.3
Samples: 4

Max nTPM: 1276.5
Min nTPM: 952.3
Sample A Male 1112.8
Sample B Male 952.3
Sample C Female 987.6
Sample D Female 1276.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.5
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 21.9
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 17.4
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 11.0
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 5.7

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