MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5667.1 nTPM
HPA Brain:8702.7 nTPM
GTEx:5667.1 nTPM
FANTOM5:3607.2 Scaled Tags Per Million
Pig:3746.0 nTPM
Mouse:794.7 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8702.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3991.8
2828 Female, age 72, unknown 6318.7
2586 Male, age 75, left hemisphere 5603.1
1827 Male, age 72, unknown 4407.3
2019 Male, age 18, unknown 4248.4
1870 Female, age 42, unknown 4125.7
1833 Male, age 53, unknown 3578.6
2666 Male, age 74, left hemisphere 3231.7
1830 Male, age 51, unknown 3094.1
2411 Female, age 72, unknown 2704.3
2219 Male, age 76, both hemispheres 2606.1
Dorsal raphe nucleus
nTPM: 6006.5
2298 Female, age 72, unknown 7740.9
2016 Female, age 72, unknown 6993.8
2047 Male, age 72, unknown 5744.6
1828 Male, age 53, unknown 5651.7
2750 Male, age 76, both hemispheres 3901.4
Inferior colliculus
nTPM: 5154.4
2849 Male, age 72, unknown 5541.7
2097 Female, age 72, unknown 5464.4
1848 Female, age 42, unknown 5177.5
1890 Male, age 53, unknown 4434.1
Median raphe nucleus
nTPM: 5103.7
2220 Male, age 76, midline 5103.7
Periaquaductal grey, anterior
nTPM: 5510.6
1795 Male, age 51, unknown 6554.9
2502 Female, age 75, unknown 5479.5
1947 Male, age 18, unknown 4497.4
Periaquaductal grey, dorsal
nTPM: 6660.7
2850 Male, age 76, both hemispheres 10129.8
1840 Male, age 53, unknown 7342.5
1831 Male, age 72, unknown 5175.5
2464 Female, age 72, unknown 3995.1
Periaquaductal grey, lateral
nTPM: 8702.7
2272 Male, age 74, both hemispheres 9642.3
2140 Male, age 76, both hemispheres 9242.0
2053 Male, age 18, unknown 7223.9
Pretectal area
nTPM: 6416.4
2273 Male, age 74, both hemispheres 13669.0
2407 Male, age 75, both hemispheres 8417.9
1944 Female, age 72, unknown 6740.8
2667 Female, age 75, unknown 6468.9
1817 Female, age 42, unknown 5511.7
2224 Female, age 72, unknown 5507.2
1816 Male, age 51, unknown 5327.5
2825 Male, age 18, unknown 5299.4
1815 Male, age 53, unknown 4869.9
2007 Male, age 72, unknown 4400.0
2316 Male, age 76, right hemisphere 4367.4
Red nucleus
nTPM: 3770.6
2725 Female, age 75, unknown 4694.3
2227 Male, age 72, unknown 4081.4
2769 Male, age 72, unknown 4066.8
2785 Male, age 18, unknown 4019.0
2503 Female, age 72, unknown 3999.3
1821 Female, age 72, unknown 3942.3
1865 Male, age 51, unknown 3914.4
1904 Male, age 53, unknown 3712.1
1954 Female, age 42, unknown 3647.2
2823 Male, age 76, right hemisphere 3504.5
2584 Male, age 75, left hemisphere 3250.1
2588 Male, age 74, left hemisphere 2415.3
Substantia nigra
nTPM: 4293.3
2699 Male, age 18, unknown 6073.9
1916 Female, age 42, unknown 5296.8
1851 Male, age 51, unknown 4882.3
1889 Female, age 72, unknown 4663.4
1941 Male, age 53, unknown 4565.5
2409 Female, age 72, unknown 4200.6
2241 Male, age 72, unknown 3793.5
2590 Female, age 75, unknown 3564.1
2583 Male, age 75, right hemisphere 3197.3
2665 Male, age 74, both hemispheres 2695.4
Superior colliculus
nTPM: 5300.0
2664 Male, age 75, both hemispheres 7403.7
1995 Male, age 72, unknown 6513.5
2087 Female, age 72, unknown 5982.0
2587 Male, age 74, left hemisphere 5628.0
1796 Male, age 53, unknown 5444.0
1913 Female, age 42, unknown 5423.9
2261 Male, age 18, unknown 4920.8
2668 Female, age 75, unknown 4472.9
1839 Male, age 51, unknown 4207.3
1895 Male, age 76, right hemisphere 3003.8
Ventral tegmental area
nTPM: 4753.3
2021 Male, age 53, unknown 5572.9
1942 Male, age 51, unknown 5493.5
1915 Female, age 42, unknown 5178.3
2223 Female, age 72, unknown 4530.9
2218 Male, age 76, both hemispheres 4278.8
2410 Female, age 72, unknown 3465.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5667.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5667.1
Samples: 183

Max nTPM: 25775.4
Min nTPM: 1055.8
Std nTPM: 3690.3
Median nTPM: 4567.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 25775.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18728.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16186.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 15606.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15324.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 15127.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 13795.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13422.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13361.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 13071.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13056.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3607.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3607.2
FF:10158-103A5 76 years, female 3607.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3746.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3381.0
Samples: 4

Max nTPM: 3629.1
Min nTPM: 3154.1
Sample A Female 3629.1
Sample B Female 3300.0
Sample C Male 3154.1
Sample D Male 3440.7
Midbrain
nTPM: 3385.2
Samples: 4

Max nTPM: 4628.0
Min nTPM: 2184.3
Sample A Female 4628.0
Sample B Female 3252.9
Sample C Male 3475.7
Sample D Male 2184.3
Periaqueductal gray
nTPM: 3573.9
Samples: 3

Max nTPM: 3892.7
Min nTPM: 3160.0
Sample B Female 3668.9
Sample C Male 3892.7
Sample D Male 3160.0
Superior colliculi
nTPM: 3746.0
Samples: 4

Max nTPM: 4950.4
Min nTPM: 2878.5
Sample A Female 4090.0
Sample B Female 4950.4
Sample C Male 3065.2
Sample D Male 2878.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 794.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 794.7
Samples: 4

Max nTPM: 869.9
Min nTPM: 752.2
Sample A Male 869.9
Sample B Male 752.2
Sample C Female 793.3
Sample D Female 763.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 22.0
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 16.2
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 6.5
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 2.3

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