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  • TISSUE

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BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3479.5 nTPM
HPA Brain:8081.1 nTPM
GTEx:3479.5 nTPM
Pig:3330.5 nTPM
Mouse:914.6 nTPM
Allen mouse:15.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8081.1
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 4254.1
2226 Male, age 75, left hemisphere 4560.5
1961 Female, age 42, unknown 3947.8
Dorsomedial nucleus
nTPM: 4410.8
1989 Male, age 62, unknown 5874.1
2017 Female, age 42, unknown 3944.8
2041 Female, age 72, unknown 3413.4
Lateral hypothalamic area
nTPM: 4359.8
2271 Male, age 75, both hemispheres 6136.9
1791 Male, age 80, right hemisphere 5748.1
2228 Male, age 66, unknown 3226.8
2412 Male, age 62, unknown 2327.6
Mammillary body
nTPM: 4977.3
1923 Female, age 72, unknown 5866.5
1834 Female, age 42, unknown 5530.3
2413 Male, age 66, unknown 5000.9
1945 Male, age 80, right hemisphere 4968.0
1948 Female, age 72, unknown 3520.9
Paraventricular nucleus
nTPM: 3111.9
2700 Male, age 62, unknown 3111.9
Preoptic area
nTPM: 3634.3
1861 Female, age 42, unknown 3813.3
1907 Male, age 80, right hemisphere 3597.6
2414 Female, age 72, unknown 3492.1
Supraoptic nucleus
nTPM: 8081.1
1894 Female, age 72, unknown 11478.7
2043 Male, age 62, unknown 8483.9
2835 Female, age 72, unknown 4280.9
Ventromedial nucleus
nTPM: 4464.7
1822 Female, age 42, unknown 4580.0
1982 Female, age 72, unknown 4349.3

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3479.5
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 3479.5
Samples: 257

Max nTPM: 15253.2
Min nTPM: 967.9
Std nTPM: 1764.7
Median nTPM: 3071.4
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 15253.2
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 10633.4
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 10173.0
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 9769.5
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 9482.2
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 8438.4
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 8421.7
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 8351.8
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 8213.8
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 7396.1
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 7116.4
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 7020.6
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 6742.4
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 6541.7
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 6311.2
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 6230.9
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 6179.3
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 6128.1
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 6039.9
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 5810.4
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 5757.6
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 5737.2
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 5540.5
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 5413.8
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 5363.5
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 5256.2
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 5238.9
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 5145.6
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 5094.5
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 5002.5
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 4985.6
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 4964.3
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 4847.9
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 4836.2
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 4824.7
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 4804.6
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 4787.3
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 4758.5
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 4739.4
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 4608.8
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 4586.4
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 4574.3
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 4566.3
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 4565.9
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 4555.4
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 4554.5
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 4552.9
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 4540.2
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 4503.0
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 4485.2
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 4441.8
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 4434.0
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 4414.1
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 4408.3
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 4399.4
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 4360.4
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 4311.9
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 4263.3
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 4208.9
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 4190.3
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 4169.8
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 4144.6
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 4141.2
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 4122.4
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 4099.5
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 4092.6
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 4089.3
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 4058.5
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 4035.8
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 4032.8
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 4032.3
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 4028.5
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 4014.7
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 4004.7
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 3991.3
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 3937.2
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 3919.4
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 3903.9
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 3897.0
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 3880.6
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 3871.9
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 3863.4
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 3809.3
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 3806.4
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 3763.8
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 3758.0
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 3749.7
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 3742.7
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 3703.8
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 3690.9
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 3675.1
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 3674.4
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 3644.4
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 3622.8
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 3619.8
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 3584.9
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 3555.1
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 3544.3
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 3536.3
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 3526.8
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 3525.7
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 3514.8
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 3504.4
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 3492.9
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 3492.9
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 3491.9
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 3448.4
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 3436.8
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 3408.5
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 3393.9
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 3373.6
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 3369.6
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 3356.8
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 3332.5
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 3324.1
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 3290.4
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 3281.6
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 3268.2
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 3262.7
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 3240.2
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 3235.2
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 3207.3
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 3197.9
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 3131.6
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 3100.2
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 3084.9
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 3080.9
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 3076.9
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 3071.4
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 3065.0
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 3060.5
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 3046.9
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 3036.3
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 3016.6
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 2993.4
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 2984.1
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 2979.3
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 2959.8
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 2959.1
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 2916.8
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 2909.2
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 2902.2
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 2893.4
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 2876.3
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 2875.7
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 2874.1
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 2871.1
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 2861.4
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 2849.7
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 2821.0
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 2815.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 2797.5
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 2796.7
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 2779.5
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 2769.0
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 2768.5
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 2731.0
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 2721.4
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 2713.1
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 2711.6
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 2704.7
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 2686.4
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 2675.9
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 2664.8
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 2663.1
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 2648.2
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 2629.7
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 2602.2
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 2600.0
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 2597.8
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 2586.4
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 2564.4
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 2552.3
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 2542.4
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 2536.6
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 2511.6
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 2506.8
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 2502.9
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 2496.6
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 2481.2
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 2470.6
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 2459.6
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 2457.5
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 2435.7
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 2431.4
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 2431.3
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 2426.8
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 2373.4
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 2368.7
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 2355.2
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 2340.8
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 2326.9
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 2325.9
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 2315.8
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 2305.3
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 2303.0
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 2295.6
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 2283.6
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 2276.6
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 2274.4
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 2230.3
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 2223.8
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 2199.9
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 2186.3
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 2185.1
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 2185.0
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 2179.1
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 2177.1
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 2176.1
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 2150.1
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 2141.9
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 2105.0
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 2090.7
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 2085.6
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 2057.8
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 2016.7
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 2010.3
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 1986.3
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 1984.8
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 1980.8
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 1976.3
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 1942.4
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 1938.1
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 1933.8
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 1887.5
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 1878.0
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 1877.4
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 1861.7
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 1826.7
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 1823.1
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 1822.1
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 1796.9
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 1793.8
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 1787.9
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 1784.3
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 1750.0
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 1733.8
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 1730.5
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 1716.3
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 1691.6
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 1681.6
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 1665.6
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 1664.0
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 1640.9
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 1638.4
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 1638.0
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 1596.9
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 1593.0
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 1566.3
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 1543.2
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 1536.0
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 1496.5
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 1461.2
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 1454.8
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 1398.7
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 1195.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 967.9
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3330.5
Pig sample Sample description nTPM
Hypothalamus
nTPM: 3330.5
Samples: 4

Max nTPM: 4004.5
Min nTPM: 2290.5
Sample A Female 4004.5
Sample B Female 3398.8
Sample C Male 3628.3
Sample D Male 2290.5

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

914.6
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 914.6
Samples: 4

Max nTPM: 985.1
Min nTPM: 868.2
Sample A Male 868.2
Sample B Male 985.1
Sample C Female 915.6
Sample D Female 889.5

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.8
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 15.8
77800883 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 24.5
79490114 Antisense, RP_070212_01_A02, Mouse strain C57BL/6J (56 days, male) 19.5
276 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 7.0
275 Antisense, RP_Baylor_102693, Mouse strain C57BL/6J (56 days, male) 2.5

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