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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
Brain methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:3033.7 nTPM
GTEx:3033.7 nTPM
FANTOM5:3763.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3033.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 3033.7
Samples: 105

Max nTPM: 5851.0
Min nTPM: 1550.9
Std nTPM: 771.9
Median nTPM:
452_1 88 years, female 5851.0
264_1 73 years, female 4593.1
384_1 83 years, male 4474.2
351_1 91 years, male 4334.8
375_1 74 years, female 4273.8
237_1 82 years, male 4268.1
189_1 76 years, male 4258.4
506_1 65 years, male 4216.4
349_1 83 years, male 4118.9
42_1 85 years, male 4112.9
99_1 64 years, male 4096.4
295_1 61 years, female 4067.9
354_1 81 years, female 4030.6
406_1 79 years, male 4026.5
4_1 88 years, female 3999.7
480_1 63 years, male 3929.2
394_1 75 years, female 3829.6
319_1 81 years, male 3817.4
173_1 67 years, male 3812.9
308_1 70 years, female 3768.4
376_1 75 years, female 3746.7
501_1 88 years, male 3660.7
17_1 71 years, male 3641.6
177_1 74 years, male 3595.3
377_1 82 years, female 3586.7
389_1 86 years, female 3552.8
254_1 77 years, female 3551.4
353_1 82 years, female 3548.7
526_1 61 years, male 3530.9
137_1 83 years, male 3524.6
396_1 62 years, male 3507.9
379_1 60 years, male 3489.8
347_1 72 years, male 3422.1
356_1 87 years, female 3316.4
322_1 76 years, male 3308.6
117_1 61 years, male 3273.4
348_1 84 years, male 3272.9
288_1 66 years, female 3270.8
414_1 84 years, female 3194.1
229_1 69 years, female 3189.1
447_1 81 years, male 3175.0
313_1 79 years, female 3165.2
320_1 89 years, female 3150.4
145_1 84 years, male 3077.3
405_1 91 years, male 3049.7
243_1 75 years, male 3043.5
109_1 81 years, female 3030.6
142_1 61 years, female 3011.7
265_1 87 years, male 3004.2
386_1 76 years, male 3001.5
35_1 74 years, female 2985.8
9_1 66 years, female 2983.5
41_1 94 years, female 2983.5
163_1 78 years, male 2979.0
115_1 83 years, male 2974.1
316_1 62 years, male 2910.2
350_1 84 years, female 2905.9
352_1 62 years, male 2894.3
120_1 70 years, female 2882.2
425_1 59 years, female 2876.9
251_1 78 years, male 2830.8
355_1 70 years, female 2808.3
286_1 68 years, female 2776.4
404_1 82 years, female 2772.7
119_1 70 years, female 2748.6
291_1 76 years, male 2740.1
518_1 75 years, female 2738.1
321_1 62 years, female 2713.9
126_1 63 years, male 2696.7
217_1 76 years, male 2669.4
162_1 79 years, female 2668.8
172_1 72 years, female 2664.0
314_1 67 years, male 2643.4
315_1 62 years, female 2637.1
335_1 73 years, female 2575.3
6_1 73 years, female 2571.3
317_1 60 years, male 2569.5
266_1 85 years, male 2526.7
81_1 67 years, male 2516.3
18_1 88 years, male 2501.4
292_1 71 years, male 2499.8
324_1 76 years, male 2479.8
503_1 68 years, male 2472.1
153_1 70 years, female 2452.1
499_1 55 years, female 2397.4
517_1 88 years, male 2371.5
218_1 71 years, female 2257.4
318_1 68 years, male 2248.0
307_1 66 years, female 2247.7
413_1 59 years, female 2199.1
293_1 68 years, female 2149.1
415_1 77 years, female 2147.2
468_1 89 years, male 2109.4
2_1 77 years, female 2054.4
246_1 77 years, male 2038.0
139_1 64 years, female 1991.1
311_1 78 years, male 1985.5
491_1 89 years, female 1925.6
43_1 64 years, female 1787.4
495_1 57 years, female 1767.1
149_1 88 years, male 1763.2
89_1 63 years, male 1760.5
32_1 67 years, male 1719.1
490_1 67 years, female 1646.0
466_1 57 years, female 1550.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3763.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 3763.9
FF:10030-101E3 24-65 years, mixed 3763.9

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