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RPL23
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  • RPL23
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:765.3 nTPM
HPA Brain:282.6 nTPM
GTEx:765.3 nTPM
FANTOM5:210.4 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:287.8 nTPM
Allen mouse:13.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.6
Sample id Sample description nTPM
Amygdala
nTPM: 282.6
2695 Female, age 67, right hemisphere 370.2
2514 Male, age 75, right hemisphere 296.7
2814 Male, age 76, right hemisphere 269.4
1987 Female, age 91, left hemisphere 262.8
2517 Female, age 94, left hemisphere 213.6
Basal amygdala
nTPM: 214.4
2827 Female, age 67, right hemisphere 281.3
2609 Male, age 75, right hemisphere 228.9
2110 Male, age 80, left hemisphere 210.4
1955 Male, age 76, both hemispheres 199.2
2685 Female, age 94, left hemisphere 193.4
2243 Female, age 91, right hemisphere 173.2
Central amygdala
nTPM: 247.5
2826 Female, age 94, left hemisphere 371.1
2515 Male, age 75, right hemisphere 249.2
1905 Male, age 76, both hemispheres 226.9
2701 Female, age 91, right hemisphere 201.0
2239 Male, age 80, left hemisphere 189.3
Corticomedial amygdala
nTPM: 215.5
2428 Male, age 75, right hemisphere 248.3
2829 Male, age 80, left hemisphere 223.2
2240 Male, age 76, both hemispheres 220.8
2242 Female, age 91, right hemisphere 213.2
2535 Female, age 67, right hemisphere 198.8
2429 Female, age 94, left hemisphere 188.5
Lateral amygdala
nTPM: 244.1
2830 Female, age 67, right hemisphere 354.2
2516 Male, age 75, right hemisphere 281.6
2534 Female, age 94, left hemisphere 245.0
1883 Male, age 76, both hemispheres 223.8
2256 Male, age 80, left hemisphere 198.1
2255 Female, age 91, right hemisphere 161.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

765.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 765.3
Samples: 181

Max nTPM: 2527.2
Min nTPM: 445.2
Std nTPM: 260.8
Median nTPM: 713.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2527.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1898.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1876.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1676.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1490.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1320.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1320.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1312.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1309.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1206.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1169.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1098.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1092.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1083.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1073.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1037.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1037.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 987.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 973.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 965.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 941.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 938.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 935.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 934.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 929.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 916.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 914.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 910.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 901.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 900.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 889.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 878.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 877.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 874.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 865.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 864.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 859.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 858.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 858.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 853.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 849.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 844.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 837.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 834.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 827.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 825.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 823.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 817.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 814.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 813.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 812.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 812.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 810.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 806.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 805.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 803.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 795.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 787.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 785.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 784.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 777.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 775.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 775.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 775.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 775.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 775.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 768.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 764.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 762.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 762.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 756.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 752.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 749.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 747.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 747.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 746.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 746.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 742.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 740.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 739.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 738.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 735.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 731.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 731.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 729.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 727.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 724.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 720.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 719.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 718.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 713.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 713.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 711.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 711.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 709.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 708.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 704.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 704.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 701.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 696.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 696.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 687.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 686.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 683.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 681.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 678.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 676.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 675.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 673.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 672.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 668.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 663.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 659.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 656.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 656.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 652.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 651.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 650.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 646.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 644.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 643.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 642.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 638.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 635.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 632.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 631.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 627.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 626.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 623.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 622.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 621.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 621.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 620.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 619.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 618.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 617.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 613.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 612.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 611.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 609.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 607.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 607.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 606.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 602.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 599.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 594.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 594.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 588.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 587.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 587.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 577.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 577.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 574.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 571.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 569.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 567.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 564.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 563.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 561.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 561.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 558.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 555.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 555.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 552.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 551.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 547.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 545.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 542.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 538.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 529.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 529.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 519.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 519.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 485.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 480.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 479.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 477.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 475.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 462.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 462.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 445.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 210.4
FF:10151-102I7 76 years, female 210.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.9
Pig sample Sample description nTPM
Amygdala
nTPM: 25.9
Samples: 4

Max nTPM: 31.0
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 30.7
Sample C Male 31.0
Sample D Male 23.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

287.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 287.8
Samples: 4

Max nTPM: 313.1
Min nTPM: 271.0
Sample A Male 271.0
Sample B Male 277.5
Sample C Female 313.1
Sample D Female 289.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.3
70813131 Antisense, RP_050712_03_C03, Mouse strain C57BL/6J (56 days, male) 15.4
68441454 Antisense, RP_041214_02_D04, Mouse strain C57BL/6J (56 days, male) 15.2
74819237 Antisense, RP_060315_02_C01, Mouse strain C57BL/6J (56 days, male) 9.4

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