MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:863.1 nTPM
HPA Brain:307.7 nTPM
GTEx:863.1 nTPM
FANTOM5:284.1 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:333.4 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 307.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 259.0
1870 Female, age 42, unknown 303.6
2666 Male, age 74, left hemisphere 293.6
1827 Male, age 72, unknown 270.0
2411 Female, age 72, unknown 269.0
1833 Male, age 53, unknown 264.7
1830 Male, age 51, unknown 262.7
2828 Female, age 72, unknown 259.8
2219 Male, age 76, both hemispheres 231.0
2586 Male, age 75, left hemisphere 218.6
2019 Male, age 18, unknown 217.2
Dorsal raphe nucleus
nTPM: 270.4
2298 Female, age 72, unknown 311.1
2016 Female, age 72, unknown 277.5
2750 Male, age 76, both hemispheres 262.6
1828 Male, age 53, unknown 260.5
2047 Male, age 72, unknown 240.6
Inferior colliculus
nTPM: 267.1
2849 Male, age 72, unknown 277.4
1890 Male, age 53, unknown 270.6
1848 Female, age 42, unknown 260.4
2097 Female, age 72, unknown 260.3
Median raphe nucleus
nTPM: 298.2
2220 Male, age 76, midline 298.2
Periaquaductal grey, anterior
nTPM: 256.2
2502 Female, age 75, unknown 284.7
1947 Male, age 18, unknown 250.5
1795 Male, age 51, unknown 233.6
Periaquaductal grey, dorsal
nTPM: 278.0
2850 Male, age 76, both hemispheres 301.6
1840 Male, age 53, unknown 295.6
1831 Male, age 72, unknown 283.5
2464 Female, age 72, unknown 231.6
Periaquaductal grey, lateral
nTPM: 256.3
2053 Male, age 18, unknown 283.0
2140 Male, age 76, both hemispheres 250.0
2272 Male, age 74, both hemispheres 235.9
Pretectal area
nTPM: 241.9
2825 Male, age 18, unknown 279.1
2224 Female, age 72, unknown 274.3
1815 Male, age 53, unknown 261.4
2316 Male, age 76, right hemisphere 260.9
1817 Female, age 42, unknown 242.0
2273 Male, age 74, both hemispheres 238.6
1816 Male, age 51, unknown 229.8
1944 Female, age 72, unknown 227.1
2407 Male, age 75, both hemispheres 226.4
2007 Male, age 72, unknown 221.3
2667 Female, age 75, unknown 200.4
Red nucleus
nTPM: 276.2
1821 Female, age 72, unknown 320.4
2503 Female, age 72, unknown 319.9
1865 Male, age 51, unknown 315.3
2725 Female, age 75, unknown 306.6
1904 Male, age 53, unknown 283.8
1954 Female, age 42, unknown 270.0
2227 Male, age 72, unknown 267.3
2769 Male, age 72, unknown 266.2
2588 Male, age 74, left hemisphere 257.8
2823 Male, age 76, right hemisphere 247.8
2584 Male, age 75, left hemisphere 242.0
2785 Male, age 18, unknown 216.9
Substantia nigra
nTPM: 307.7
2699 Male, age 18, unknown 376.6
2409 Female, age 72, unknown 347.4
2665 Male, age 74, both hemispheres 339.9
2241 Male, age 72, unknown 334.2
1851 Male, age 51, unknown 332.6
1916 Female, age 42, unknown 310.2
2590 Female, age 75, unknown 290.1
1889 Female, age 72, unknown 279.7
1941 Male, age 53, unknown 267.3
2583 Male, age 75, right hemisphere 198.7
Superior colliculus
nTPM: 261.4
2587 Male, age 74, left hemisphere 355.5
1913 Female, age 42, unknown 286.3
1995 Male, age 72, unknown 271.4
1895 Male, age 76, right hemisphere 261.6
2668 Female, age 75, unknown 261.2
1839 Male, age 51, unknown 251.8
2261 Male, age 18, unknown 248.3
1796 Male, age 53, unknown 244.2
2087 Female, age 72, unknown 218.1
2664 Male, age 75, both hemispheres 215.7
Ventral tegmental area
nTPM: 298.7
1915 Female, age 42, unknown 336.8
2223 Female, age 72, unknown 319.0
2410 Female, age 72, unknown 299.1
2021 Male, age 53, unknown 296.5
1942 Male, age 51, unknown 272.9
2218 Male, age 76, both hemispheres 267.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 863.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 863.1
Samples: 183

Max nTPM: 1916.2
Min nTPM: 391.8
Std nTPM: 258.9
Median nTPM: 829.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1916.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1774.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1578.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1565.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1494.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1492.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1440.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1400.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1354.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1347.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1302.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 284.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 284.1
FF:10158-103A5 76 years, female 284.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 24.1
Sample C Male 15.8
Sample D Male 17.9
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 21.8
Sample C Male 17.9
Sample D Male 15.5
Periaqueductal gray
nTPM: 18.9
Samples: 3

Max nTPM: 22.1
Min nTPM: 16.0
Sample B Female 22.1
Sample C Male 16.0
Sample D Male 18.6
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 27.2
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 27.2
Sample C Male 16.0
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 333.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 333.4
Samples: 4

Max nTPM: 360.2
Min nTPM: 310.7
Sample A Male 360.2
Sample B Male 333.4
Sample C Female 310.7
Sample D Female 329.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
68441454 Antisense, RP_041214_02_D04, Mouse strain C57BL/6J (56 days, male) 12.0
74819237 Antisense, RP_060315_02_C01, Mouse strain C57BL/6J (56 days, male) 10.0
70813131 Antisense, RP_050712_03_C03, Mouse strain C57BL/6J (56 days, male) 9.6

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