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  • SNRPD2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:339.2 nTPM
HPA Brain:109.5 nTPM
GTEx:339.2 nTPM
FANTOM5:92.8 Scaled Tags Per Million
Pig:91.1 nTPM
Mouse:65.1 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
Sample id Sample description nTPM
Amygdala
nTPM: 109.5
2814 Male, age 76, right hemisphere 121.5
2695 Female, age 67, right hemisphere 115.6
1987 Female, age 91, left hemisphere 108.1
2514 Male, age 75, right hemisphere 103.3
2517 Female, age 94, left hemisphere 98.8
Basal amygdala
nTPM: 99.8
2609 Male, age 75, right hemisphere 105.5
2685 Female, age 94, left hemisphere 104.0
1955 Male, age 76, both hemispheres 100.9
2110 Male, age 80, left hemisphere 100.8
2243 Female, age 91, right hemisphere 98.4
2827 Female, age 67, right hemisphere 89.3
Central amygdala
nTPM: 103.8
2826 Female, age 94, left hemisphere 127.5
1905 Male, age 76, both hemispheres 107.9
2515 Male, age 75, right hemisphere 105.7
2701 Female, age 91, right hemisphere 92.9
2239 Male, age 80, left hemisphere 85.1
Corticomedial amygdala
nTPM: 98.5
2829 Male, age 80, left hemisphere 115.8
2242 Female, age 91, right hemisphere 109.6
2428 Male, age 75, right hemisphere 100.8
2429 Female, age 94, left hemisphere 99.8
2240 Male, age 76, both hemispheres 83.4
2535 Female, age 67, right hemisphere 81.5
Lateral amygdala
nTPM: 97.1
2534 Female, age 94, left hemisphere 114.9
2516 Male, age 75, right hemisphere 110.7
1883 Male, age 76, both hemispheres 105.8
2830 Female, age 67, right hemisphere 88.0
2255 Female, age 91, right hemisphere 82.0
2256 Male, age 80, left hemisphere 81.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 339.2
Samples: 181

Max nTPM: 1028.1
Min nTPM: 166.2
Std nTPM: 112.9
Median nTPM: 315.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1028.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 831.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 811.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 760.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 669.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 631.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 607.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 585.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 537.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 514.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 488.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 479.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 478.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 468.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 465.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 463.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 457.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 457.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 436.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 434.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 426.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 425.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 424.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 420.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 416.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 414.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 412.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 407.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 406.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 402.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 401.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 395.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 392.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 390.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 388.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 387.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 387.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 386.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 385.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 379.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 379.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 378.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 377.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 377.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 377.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 375.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 374.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 372.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 366.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 364.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 361.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 358.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 356.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 355.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 354.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 353.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 353.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 352.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 351.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 350.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 349.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 347.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 346.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 345.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 343.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 343.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 340.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 336.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 336.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 333.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 331.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 330.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 330.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 329.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 329.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 328.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 326.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 326.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 325.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 325.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 325.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 320.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 319.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 319.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 319.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 318.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 317.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 317.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 316.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 316.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 315.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 313.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 313.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 313.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 311.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 310.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 310.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 308.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 307.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 307.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 307.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 306.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 305.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 305.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 304.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 304.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 303.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 302.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 299.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 298.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 297.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 297.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 295.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 294.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 294.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 292.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 292.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 291.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 291.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 290.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 286.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 285.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 285.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 285.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 285.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 284.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 284.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 283.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 282.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 279.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 279.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 278.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 278.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 278.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 277.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 276.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 271.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 271.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 271.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 271.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 271.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 269.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 268.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 267.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 266.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 264.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 263.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 262.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 261.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 257.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 257.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 250.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 249.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 249.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 248.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 247.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 247.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 245.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 244.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 243.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 241.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 240.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 240.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 239.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 237.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 235.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 232.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 231.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 231.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 229.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 227.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 222.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 222.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 221.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 218.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 207.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 207.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 207.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 200.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 166.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

92.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.8
FF:10151-102I7 76 years, female 92.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.1
Pig sample Sample description nTPM
Amygdala
nTPM: 91.1
Samples: 4

Max nTPM: 136.1
Min nTPM: 58.7
Sample A Female 136.1
Sample B Female 85.3
Sample C Male 84.3
Sample D Male 58.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 65.1
Samples: 4

Max nTPM: 66.9
Min nTPM: 62.6
Sample A Male 66.9
Sample B Male 66.0
Sample C Female 62.6
Sample D Female 64.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
68744002 Antisense, RP_050203_02_A05, Mouse strain C57BL/6J (56 days, male) 4.6

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