MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:303.0 nTPM
HPA Brain:117.4 nTPM
GTEx:303.0 nTPM
FANTOM5:72.7 Scaled Tags Per Million
Pig:154.2 nTPM
Mouse:45.2 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.3
2586 Male, age 75, left hemisphere 119.4
1870 Female, age 42, unknown 115.3
1827 Male, age 72, unknown 115.1
2411 Female, age 72, unknown 104.7
2666 Male, age 74, left hemisphere 103.7
2019 Male, age 18, unknown 103.3
2828 Female, age 72, unknown 102.7
1833 Male, age 53, unknown 97.8
1830 Male, age 51, unknown 93.0
2219 Male, age 76, both hemispheres 88.0
Dorsal raphe nucleus
nTPM: 110.1
2298 Female, age 72, unknown 123.4
2047 Male, age 72, unknown 120.2
1828 Male, age 53, unknown 105.9
2750 Male, age 76, both hemispheres 103.8
2016 Female, age 72, unknown 97.1
Inferior colliculus
nTPM: 106.5
1848 Female, age 42, unknown 110.6
2097 Female, age 72, unknown 106.7
2849 Male, age 72, unknown 105.8
1890 Male, age 53, unknown 103.0
Median raphe nucleus
nTPM: 117.4
2220 Male, age 76, midline 117.4
Periaquaductal grey, anterior
nTPM: 105.3
1795 Male, age 51, unknown 107.5
1947 Male, age 18, unknown 107.4
2502 Female, age 75, unknown 101.0
Periaquaductal grey, dorsal
nTPM: 94.7
2850 Male, age 76, both hemispheres 105.4
1840 Male, age 53, unknown 104.6
1831 Male, age 72, unknown 92.1
2464 Female, age 72, unknown 76.6
Periaquaductal grey, lateral
nTPM: 97.3
2053 Male, age 18, unknown 101.4
2272 Male, age 74, both hemispheres 98.4
2140 Male, age 76, both hemispheres 92.2
Pretectal area
nTPM: 112.1
1817 Female, age 42, unknown 131.6
2007 Male, age 72, unknown 126.2
1944 Female, age 72, unknown 123.7
1816 Male, age 51, unknown 119.5
1815 Male, age 53, unknown 113.9
2224 Female, age 72, unknown 112.3
2667 Female, age 75, unknown 110.7
2825 Male, age 18, unknown 107.1
2407 Male, age 75, both hemispheres 99.2
2273 Male, age 74, both hemispheres 99.1
2316 Male, age 76, right hemisphere 90.0
Red nucleus
nTPM: 101.8
1821 Female, age 72, unknown 124.3
2725 Female, age 75, unknown 111.6
2584 Male, age 75, left hemisphere 110.5
2785 Male, age 18, unknown 105.5
1954 Female, age 42, unknown 103.0
2503 Female, age 72, unknown 101.1
1865 Male, age 51, unknown 97.7
1904 Male, age 53, unknown 97.4
2227 Male, age 72, unknown 97.2
2769 Male, age 72, unknown 95.5
2588 Male, age 74, left hemisphere 90.6
2823 Male, age 76, right hemisphere 87.6
Substantia nigra
nTPM: 116.2
1916 Female, age 42, unknown 133.1
1851 Male, age 51, unknown 127.5
2665 Male, age 74, both hemispheres 124.4
1889 Female, age 72, unknown 124.2
1941 Male, age 53, unknown 121.8
2699 Male, age 18, unknown 119.3
2590 Female, age 75, unknown 105.4
2241 Male, age 72, unknown 104.4
2409 Female, age 72, unknown 104.4
2583 Male, age 75, right hemisphere 97.7
Superior colliculus
nTPM: 105.5
2587 Male, age 74, left hemisphere 120.1
1796 Male, age 53, unknown 115.3
1895 Male, age 76, right hemisphere 113.1
2668 Female, age 75, unknown 110.1
1839 Male, age 51, unknown 106.2
2087 Female, age 72, unknown 102.5
2664 Male, age 75, both hemispheres 98.5
1913 Female, age 42, unknown 96.6
2261 Male, age 18, unknown 96.3
1995 Male, age 72, unknown 96.2
Ventral tegmental area
nTPM: 108.3
1915 Female, age 42, unknown 123.1
2410 Female, age 72, unknown 114.9
2218 Male, age 76, both hemispheres 107.0
2223 Female, age 72, unknown 104.9
1942 Male, age 51, unknown 102.6
2021 Male, age 53, unknown 97.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 303.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 303.0
Samples: 183

Max nTPM: 577.8
Min nTPM: 183.9
Std nTPM: 65.6
Median nTPM: 289.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 577.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 496.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 461.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 453.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 447.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 442.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 440.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 431.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 429.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 426.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 426.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.7
FF:10158-103A5 76 years, female 72.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 154.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 144.6
Samples: 4

Max nTPM: 193.6
Min nTPM: 122.2
Sample A Female 193.6
Sample B Female 137.4
Sample C Male 125.0
Sample D Male 122.2
Midbrain
nTPM: 150.8
Samples: 4

Max nTPM: 226.1
Min nTPM: 111.6
Sample A Female 226.1
Sample B Female 137.8
Sample C Male 127.5
Sample D Male 111.6
Periaqueductal gray
nTPM: 106.2
Samples: 3

Max nTPM: 126.1
Min nTPM: 90.5
Sample B Female 102.0
Sample C Male 126.1
Sample D Male 90.5
Superior colliculi
nTPM: 154.2
Samples: 4

Max nTPM: 199.3
Min nTPM: 133.0
Sample A Female 199.3
Sample B Female 146.7
Sample C Male 137.7
Sample D Male 133.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 45.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 49.1
Min nTPM: 41.9
Sample A Male 49.1
Sample B Male 41.9
Sample C Female 43.0
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68744002 Antisense, RP_050203_02_A05, Mouse strain C57BL/6J (56 days, male) 3.4

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