MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:434.3 nTPM
HPA Brain:400.4 nTPM
GTEx:434.3 nTPM
FANTOM5:447.7 Scaled Tags Per Million
Pig:321.7 nTPM
Mouse:4.8 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 400.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 302.3
1833 Male, age 53, unknown 422.0
1830 Male, age 51, unknown 407.8
2411 Female, age 72, unknown 395.9
1870 Female, age 42, unknown 371.5
2019 Male, age 18, unknown 333.0
2219 Male, age 76, both hemispheres 285.2
2828 Female, age 72, unknown 284.2
1827 Male, age 72, unknown 213.8
2666 Male, age 74, left hemisphere 189.5
2586 Male, age 75, left hemisphere 120.0
Dorsal raphe nucleus
nTPM: 222.6
2750 Male, age 76, both hemispheres 342.9
2016 Female, age 72, unknown 260.5
1828 Male, age 53, unknown 217.7
2298 Female, age 72, unknown 165.4
2047 Male, age 72, unknown 126.5
Inferior colliculus
nTPM: 224.5
2849 Male, age 72, unknown 257.2
1848 Female, age 42, unknown 239.8
1890 Male, age 53, unknown 203.8
2097 Female, age 72, unknown 197.3
Median raphe nucleus
nTPM: 150.1
2220 Male, age 76, midline 150.1
Periaquaductal grey, anterior
nTPM: 191.0
2502 Female, age 75, unknown 249.8
1947 Male, age 18, unknown 184.2
1795 Male, age 51, unknown 139.0
Periaquaductal grey, dorsal
nTPM: 159.2
2464 Female, age 72, unknown 253.9
1831 Male, age 72, unknown 158.5
2850 Male, age 76, both hemispheres 120.7
1840 Male, age 53, unknown 103.5
Periaquaductal grey, lateral
nTPM: 190.9
2272 Male, age 74, both hemispheres 257.4
2053 Male, age 18, unknown 202.5
2140 Male, age 76, both hemispheres 112.9
Pretectal area
nTPM: 207.2
2316 Male, age 76, right hemisphere 335.8
1815 Male, age 53, unknown 303.0
1817 Female, age 42, unknown 246.3
2825 Male, age 18, unknown 221.1
2407 Male, age 75, both hemispheres 214.1
2273 Male, age 74, both hemispheres 196.4
2007 Male, age 72, unknown 195.9
2224 Female, age 72, unknown 177.7
2667 Female, age 75, unknown 160.9
1944 Female, age 72, unknown 118.3
1816 Male, age 51, unknown 109.5
Red nucleus
nTPM: 400.4
1821 Female, age 72, unknown 545.8
1904 Male, age 53, unknown 503.6
2823 Male, age 76, right hemisphere 499.8
1865 Male, age 51, unknown 489.8
1954 Female, age 42, unknown 453.1
2503 Female, age 72, unknown 410.7
2769 Male, age 72, unknown 410.3
2227 Male, age 72, unknown 404.0
2785 Male, age 18, unknown 394.3
2725 Female, age 75, unknown 271.5
2588 Male, age 74, left hemisphere 246.2
2584 Male, age 75, left hemisphere 176.0
Substantia nigra
nTPM: 216.3
2590 Female, age 75, unknown 275.3
1851 Male, age 51, unknown 271.1
2409 Female, age 72, unknown 246.9
1889 Female, age 72, unknown 245.6
2699 Male, age 18, unknown 230.1
2583 Male, age 75, right hemisphere 210.1
2241 Male, age 72, unknown 197.0
1916 Female, age 42, unknown 171.3
2665 Male, age 74, both hemispheres 165.8
1941 Male, age 53, unknown 150.0
Superior colliculus
nTPM: 260.2
1995 Male, age 72, unknown 408.2
1913 Female, age 42, unknown 383.0
1895 Male, age 76, right hemisphere 378.7
2587 Male, age 74, left hemisphere 299.7
1839 Male, age 51, unknown 286.7
2668 Female, age 75, unknown 234.8
1796 Male, age 53, unknown 208.8
2261 Male, age 18, unknown 144.7
2087 Female, age 72, unknown 141.3
2664 Male, age 75, both hemispheres 116.1
Ventral tegmental area
nTPM: 243.3
2410 Female, age 72, unknown 373.8
2223 Female, age 72, unknown 265.4
1915 Female, age 42, unknown 228.2
2218 Male, age 76, both hemispheres 201.5
1942 Male, age 51, unknown 199.1
2021 Male, age 53, unknown 191.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 434.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 434.3
Samples: 183

Max nTPM: 1574.1
Min nTPM: 41.6
Std nTPM: 248.9
Median nTPM: 355.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1574.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1519.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1432.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1362.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1029.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 961.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 956.8
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 911.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 910.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 894.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 865.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 447.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 447.7
FF:10158-103A5 76 years, female 447.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 321.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 242.0
Samples: 4

Max nTPM: 286.3
Min nTPM: 209.2
Sample A Female 286.3
Sample B Female 222.0
Sample C Male 250.4
Sample D Male 209.2
Midbrain
nTPM: 268.7
Samples: 4

Max nTPM: 342.7
Min nTPM: 175.0
Sample A Female 342.7
Sample B Female 303.0
Sample C Male 254.1
Sample D Male 175.0
Periaqueductal gray
nTPM: 321.7
Samples: 3

Max nTPM: 377.7
Min nTPM: 279.5
Sample B Female 279.5
Sample C Male 377.7
Sample D Male 307.8
Superior colliculi
nTPM: 192.2
Samples: 4

Max nTPM: 239.1
Min nTPM: 105.1
Sample A Female 205.7
Sample B Female 105.1
Sample C Male 219.0
Sample D Male 239.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.7
Sample A Male 5.6
Sample B Male 4.2
Sample C Female 5.7
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68522503 Antisense, RP_050118_02_B09, Mouse strain C57BL/6J (56 days, male) 0.2

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