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RPL36
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  • RPL36
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:974.7 nTPM
HPA Brain:309.0 nTPM
GTEx:974.7 nTPM
FANTOM5:223.1 Scaled Tags Per Million
Pig:196.1 nTPM
Mouse:673.8 nTPM
Allen mouse:25.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.0
Sample id Sample description nTPM
Amygdala
nTPM: 309.0
2695 Female, age 67, right hemisphere 402.8
2514 Male, age 75, right hemisphere 326.6
2517 Female, age 94, left hemisphere 284.5
1987 Female, age 91, left hemisphere 275.3
2814 Male, age 76, right hemisphere 255.6
Basal amygdala
nTPM: 268.5
2827 Female, age 67, right hemisphere 335.4
2609 Male, age 75, right hemisphere 292.1
2685 Female, age 94, left hemisphere 274.0
2110 Male, age 80, left hemisphere 251.6
2243 Female, age 91, right hemisphere 233.3
1955 Male, age 76, both hemispheres 224.5
Central amygdala
nTPM: 286.7
2826 Female, age 94, left hemisphere 426.9
2515 Male, age 75, right hemisphere 298.7
2239 Male, age 80, left hemisphere 240.7
2701 Female, age 91, right hemisphere 235.7
1905 Male, age 76, both hemispheres 231.5
Corticomedial amygdala
nTPM: 257.5
2829 Male, age 80, left hemisphere 298.6
2428 Male, age 75, right hemisphere 273.6
2429 Female, age 94, left hemisphere 264.9
2535 Female, age 67, right hemisphere 250.0
2242 Female, age 91, right hemisphere 248.2
2240 Male, age 76, both hemispheres 209.7
Lateral amygdala
nTPM: 286.7
2830 Female, age 67, right hemisphere 428.1
2516 Male, age 75, right hemisphere 312.6
2534 Female, age 94, left hemisphere 303.8
2256 Male, age 80, left hemisphere 235.7
2255 Female, age 91, right hemisphere 226.3
1883 Male, age 76, both hemispheres 213.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

974.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 974.7
Samples: 181

Max nTPM: 2978.0
Min nTPM: 441.1
Std nTPM: 401.1
Median nTPM: 885.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2978.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2868.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2624.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2221.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2052.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2041.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1928.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1892.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1760.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1741.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1690.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1551.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1509.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1499.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1476.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1474.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1429.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1423.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1410.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1398.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1393.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1382.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1362.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1320.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1276.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1257.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1247.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1233.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1230.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1220.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1217.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1206.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1203.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1176.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1167.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1166.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1165.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1158.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1154.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1143.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1133.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1131.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1116.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1115.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1108.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1107.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1106.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1099.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1095.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1088.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1084.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1066.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1056.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1053.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1048.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1036.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1029.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1022.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1015.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1007.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1003.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1002.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 999.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 993.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 988.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 983.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 978.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 975.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 958.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 957.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 957.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 955.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 953.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 951.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 944.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 944.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 941.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 940.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 939.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 934.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 934.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 926.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 921.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 918.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 917.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 912.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 911.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 909.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 900.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 895.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 885.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 885.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 884.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 878.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 876.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 876.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 875.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 873.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 870.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 866.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 866.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 866.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 854.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 845.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 842.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 834.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 834.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 827.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 822.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 821.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 818.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 817.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 817.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 814.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 809.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 806.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 803.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 802.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 802.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 801.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 798.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 788.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 783.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 779.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 778.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 772.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 772.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 762.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 748.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 746.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 744.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 733.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 725.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 722.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 715.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 712.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 705.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 697.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 697.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 692.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 692.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 684.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 683.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 683.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 683.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 681.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 679.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 667.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 666.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 665.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 665.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 663.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 662.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 660.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 658.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 651.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 629.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 628.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 618.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 615.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 606.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 598.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 588.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 586.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 584.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 576.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 575.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 569.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 565.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 563.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 561.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 537.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 534.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 529.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 522.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 517.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 511.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 488.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 467.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 466.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 441.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

223.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 223.1
FF:10151-102I7 76 years, female 223.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.1
Pig sample Sample description nTPM
Amygdala
nTPM: 196.1
Samples: 4

Max nTPM: 246.4
Min nTPM: 129.1
Sample A Female 246.4
Sample B Female 214.9
Sample C Male 193.8
Sample D Male 129.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

673.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 673.8
Samples: 4

Max nTPM: 805.4
Min nTPM: 606.5
Sample A Male 606.5
Sample B Male 639.6
Sample C Female 805.4
Sample D Female 643.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.6
68410536 Antisense, RP_041214_02_B01, Mouse strain C57BL/6J (56 days, male) 25.6

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