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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA047153
Glial cells
High
Neuronal cells
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
256.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 256.6
2529
Female, age 94, left hemisphere
300.6
1898
Male, age 80, left hemisphere
299.5
2621
Female, age 67, right hemisphere
260.7
1911
Female, age 85, right hemisphere
234.2
1855
Male, age 76, left hemisphere
229.3
2148
Female, age 91, left hemisphere
215.1
Dentate gyrus nTPM: 234.1
2530
Female, age 94, left hemisphere
299.5
2010
Male, age 76, both hemispheres
258.9
2246
Female, age 85, both hemispheres
232.0
2531
Female, age 67, both hemispheres
222.5
1927
Female, age 91, both hemispheres
214.8
2528
Male, age 74, both hemispheres
177.1
Entorhinal gyrus nTPM: 240.6
2686
Male, age 75, right hemisphere
286.0
2117
Female, age 91, right hemisphere
245.9
1787
Male, age 76, left hemisphere
243.4
2764
Male, age 80, right hemisphere
240.5
1938
Female, age 85, left hemisphere
230.5
2613
Female, age 94, left hemisphere
197.4
Hippocampus, CA1 nTPM: 241.2
1873
Female, age 85, both hemispheres
262.3
2045
Male, age 76, both hemispheres
260.7
2749
Male, age 80, left hemisphere
239.5
2082
Female, age 91, right hemisphere
232.5
2527
Male, age 74, both hemispheres
210.8
Hippocampus, CA2 nTPM: 222.6
2437
Female, age 94, left hemisphere
251.6
1963
Male, age 80, left hemisphere
251.4
1892
Male, age 76, both hemispheres
239.0
2113
Female, age 91, right hemisphere
216.8
1940
Female, age 85, left hemisphere
192.9
2249
Male, age 74, both hemispheres
183.9
Hippocampus, CA3 nTPM: 223.2
2861
Female, age 67, both hemispheres
261.1
1867
Male, age 76, both hemispheres
247.4
1891
Female, age 85, both hemispheres
243.0
2137
Male, age 80, left hemisphere
215.6
2436
Male, age 74, both hemispheres
188.7
2620
Female, age 94, left hemisphere
183.2
Parahippocampal cortex nTPM: 230.5
2018
Male, age 76, both hemispheres
312.4
2250
Female, age 67, right hemisphere
267.1
2245
Female, age 91, both hemispheres
241.3
1850
Male, age 80, both hemispheres
239.4
1933
Female, age 85, both hemispheres
238.1
2532
Female, age 72, left hemisphere
222.8
1990
Female, age 91, right hemisphere
222.2
2692
Male, age 74, both hemispheres
193.7
2622
Female, age 67, right hemisphere
191.1
2693
Female, age 94, both hemispheres
176.8
Perirhinal gyrus nTPM: 246.4
1847
Female, age 91, left hemisphere
284.0
1841
Female, age 85, right hemisphere
283.1
1794
Male, age 80, right hemisphere
244.4
2848
Male, age 76, right hemisphere
212.9
2521
Female, age 94, right hemisphere
207.3
Subiculum nTPM: 240.2
2042
Male, age 76, both hemispheres
300.6
1977
Female, age 85, both hemispheres
257.3
1901
Male, age 80, both hemispheres
240.7
2438
Female, age 94, left hemisphere
240.3
2619
Male, age 74, both hemispheres
215.1
2729
Female, age 91, right hemisphere
187.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
703.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 703.7
Samples: 255
Max nTPM: 1981.4
Min nTPM: 254.3
Std nTPM: 251.0
Median nTPM: 650.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1981.4
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
1629.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
1582.2
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
1481.4
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
1422.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1415.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1365.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
1319.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
1285.3
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
1267.3
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
1162.0
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
1149.1
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
1132.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1132.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1121.1
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
1097.2
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
1095.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1087.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1084.3
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
1076.3
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
1074.5
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
1070.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
1069.4
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
1060.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
1053.5
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
1044.7
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
1040.2
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
1039.7
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
1013.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1011.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
992.5
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
990.2
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
988.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
986.5
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
978.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
964.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
951.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
939.8
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
926.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
918.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
916.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
914.2
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
914.2
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
910.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
908.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
904.8
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
902.2
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
899.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
896.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
896.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
876.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
875.2
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
874.7
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
870.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
865.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
860.7
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
859.7
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
858.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
853.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
842.0
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
841.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
835.9
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
813.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
813.1
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
812.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
811.2
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
810.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
803.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
802.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
800.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
800.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
795.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
794.1
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
784.3
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
779.2
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
774.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
772.6
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
771.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
769.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
768.9
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
763.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
761.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
760.2
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
759.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
748.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
745.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
743.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
743.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
738.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
736.2
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
731.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
731.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
725.5
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
719.0
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
718.8
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
714.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
713.6
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
712.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
712.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
708.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
700.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
698.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
696.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
695.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
692.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
691.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
691.4
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
681.6
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
680.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
678.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
676.8
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
676.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
675.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
670.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
670.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
669.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
669.4
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
668.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
665.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
663.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
660.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
660.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
658.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
656.9
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
656.6
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
652.7
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
651.7
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
650.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
649.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
648.8
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
648.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
648.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
646.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
646.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
645.5
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
644.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
642.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
641.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
638.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
636.8
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
636.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
636.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
630.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
629.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
628.4
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
626.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
623.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
621.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
620.9
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
620.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
617.4
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
612.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
607.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
605.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
601.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
601.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
598.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
597.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
596.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
596.4
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
589.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
587.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
586.5
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
584.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
583.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
581.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
580.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
576.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
575.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
573.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
569.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
569.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
568.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
567.3
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
567.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
566.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
563.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
561.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
561.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
557.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
555.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
553.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
551.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
549.2
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
542.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
539.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
538.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
535.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
535.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
532.6
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
531.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
528.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
524.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
523.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
521.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
518.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
516.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
514.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
514.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
514.0
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
510.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
507.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
505.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
505.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
504.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
500.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
498.6
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
498.2
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
497.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
493.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
490.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
490.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
488.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
485.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
484.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
483.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
478.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
478.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
469.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
469.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
467.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
467.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
464.2
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
463.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
462.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
462.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
460.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
457.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
456.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
456.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
455.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
450.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
447.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
441.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
437.7
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
434.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
422.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
420.1
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
420.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
417.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
400.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
399.1
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
398.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
391.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
385.6
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
381.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
365.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
357.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
357.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
352.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
337.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
321.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
287.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
284.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
254.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
248.8
Pig sample
Sample description
nTPM
Subiculum nTPM: 213.8
Samples: 4
Max nTPM: 286.9
Min nTPM: 175.6
Sample A
Female
286.9
Sample B
Female
206.5
Sample C
Male
175.6
Sample D
Male
186.1
Dorsal hippocampus nTPM: 248.8
Samples: 4
Max nTPM: 322.9
Min nTPM: 171.6
Sample A
Female
322.9
Sample B
Female
207.4
Sample C
Male
293.4
Sample D
Male
171.6
Entorhinal cortex nTPM: 208.4
Samples: 4
Max nTPM: 244.5
Min nTPM: 159.2
Sample A
Female
202.4
Sample B
Female
244.5
Sample C
Male
227.6
Sample D
Male
159.2
Ventral hippocampus nTPM: 224.6
Samples: 4
Max nTPM: 286.7
Min nTPM: 185.1
Sample A
Female
203.6
Sample B
Female
185.1
Sample C
Male
286.7
Sample D
Male
222.9
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
396.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 397.0
Samples: 4
Max nTPM: 464.9
Min nTPM: 337.8
Sample A
Male
437.9
Sample B
Male
464.9
Sample C
Female
347.3
Sample D
Female
337.8
Hippocampal formation nTPM: 382.1
Samples: 4
Max nTPM: 456.2
Min nTPM: 315.4
Sample A
Male
368.7
Sample B
Male
388.2
Sample C
Female
315.4
Sample D
Female
456.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.