MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:739.6 nTPM
HPA Brain:264.9 nTPM
GTEx:739.6 nTPM
FANTOM5:140.5 Scaled Tags Per Million
Pig:298.5 nTPM
Mouse:206.3 nTPM
Allen mouse:18.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 264.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.9
2586 Male, age 75, left hemisphere 306.5
2666 Male, age 74, left hemisphere 283.7
1870 Female, age 42, unknown 265.7
1827 Male, age 72, unknown 249.9
2828 Female, age 72, unknown 247.3
1833 Male, age 53, unknown 224.9
2411 Female, age 72, unknown 209.9
1830 Male, age 51, unknown 203.9
2019 Male, age 18, unknown 196.0
2219 Male, age 76, both hemispheres 191.3
Dorsal raphe nucleus
nTPM: 231.4
2298 Female, age 72, unknown 248.7
2750 Male, age 76, both hemispheres 235.2
2016 Female, age 72, unknown 230.9
2047 Male, age 72, unknown 223.2
1828 Male, age 53, unknown 218.8
Inferior colliculus
nTPM: 227.9
2849 Male, age 72, unknown 256.6
1890 Male, age 53, unknown 225.0
2097 Female, age 72, unknown 223.5
1848 Female, age 42, unknown 206.4
Median raphe nucleus
nTPM: 237.9
2220 Male, age 76, midline 237.9
Periaquaductal grey, anterior
nTPM: 226.4
2502 Female, age 75, unknown 232.8
1947 Male, age 18, unknown 224.2
1795 Male, age 51, unknown 222.1
Periaquaductal grey, dorsal
nTPM: 237.9
1840 Male, age 53, unknown 281.6
2850 Male, age 76, both hemispheres 253.2
1831 Male, age 72, unknown 225.3
2464 Female, age 72, unknown 191.7
Periaquaductal grey, lateral
nTPM: 217.7
2053 Male, age 18, unknown 243.2
2140 Male, age 76, both hemispheres 234.9
2272 Male, age 74, both hemispheres 175.0
Pretectal area
nTPM: 234.1
1817 Female, age 42, unknown 272.9
2007 Male, age 72, unknown 255.9
2316 Male, age 76, right hemisphere 250.7
1815 Male, age 53, unknown 249.3
2825 Male, age 18, unknown 245.6
2224 Female, age 72, unknown 238.9
1816 Male, age 51, unknown 238.1
1944 Female, age 72, unknown 234.1
2667 Female, age 75, unknown 233.3
2407 Male, age 75, both hemispheres 193.3
2273 Male, age 74, both hemispheres 162.6
Red nucleus
nTPM: 227.0
2588 Male, age 74, left hemisphere 258.0
2503 Female, age 72, unknown 254.8
1865 Male, age 51, unknown 253.8
2584 Male, age 75, left hemisphere 242.0
2725 Female, age 75, unknown 238.4
2785 Male, age 18, unknown 229.8
1821 Female, age 72, unknown 225.2
2769 Male, age 72, unknown 221.3
1904 Male, age 53, unknown 206.2
2227 Male, age 72, unknown 206.0
2823 Male, age 76, right hemisphere 195.8
1954 Female, age 42, unknown 193.3
Substantia nigra
nTPM: 264.9
2665 Male, age 74, both hemispheres 317.5
1851 Male, age 51, unknown 315.7
2699 Male, age 18, unknown 295.7
2409 Female, age 72, unknown 292.5
1916 Female, age 42, unknown 277.7
2241 Male, age 72, unknown 244.2
1889 Female, age 72, unknown 235.1
2583 Male, age 75, right hemisphere 234.6
1941 Male, age 53, unknown 221.1
2590 Female, age 75, unknown 214.8
Superior colliculus
nTPM: 244.9
2587 Male, age 74, left hemisphere 282.6
2668 Female, age 75, unknown 273.0
1913 Female, age 42, unknown 257.1
1796 Male, age 53, unknown 251.3
2664 Male, age 75, both hemispheres 244.7
1995 Male, age 72, unknown 239.9
1839 Male, age 51, unknown 231.2
1895 Male, age 76, right hemisphere 228.6
2087 Female, age 72, unknown 224.6
2261 Male, age 18, unknown 215.6
Ventral tegmental area
nTPM: 242.8
1915 Female, age 42, unknown 287.2
2223 Female, age 72, unknown 270.4
2021 Male, age 53, unknown 263.9
2218 Male, age 76, both hemispheres 216.6
1942 Male, age 51, unknown 215.1
2410 Female, age 72, unknown 203.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 739.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 739.6
Samples: 183

Max nTPM: 2740.8
Min nTPM: 270.3
Std nTPM: 334.0
Median nTPM: 659.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2740.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2204.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2024.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1629.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1628.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1602.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1557.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1491.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1375.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1344.5
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1300.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 140.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.5
FF:10158-103A5 76 years, female 140.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 298.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 298.5
Samples: 4

Max nTPM: 362.6
Min nTPM: 266.5
Sample A Female 362.6
Sample B Female 291.8
Sample C Male 266.5
Sample D Male 272.9
Midbrain
nTPM: 297.8
Samples: 4

Max nTPM: 433.2
Min nTPM: 189.1
Sample A Female 433.2
Sample B Female 325.3
Sample C Male 243.4
Sample D Male 189.1
Periaqueductal gray
nTPM: 244.9
Samples: 3

Max nTPM: 268.0
Min nTPM: 217.0
Sample B Female 249.6
Sample C Male 268.0
Sample D Male 217.0
Superior colliculi
nTPM: 291.3
Samples: 4

Max nTPM: 338.1
Min nTPM: 269.1
Sample A Female 338.1
Sample B Female 277.8
Sample C Male 280.0
Sample D Male 269.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 206.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 206.3
Samples: 4

Max nTPM: 299.3
Min nTPM: 150.6
Sample A Male 299.3
Sample B Male 151.6
Sample C Female 150.6
Sample D Female 223.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.2
68410536 Antisense, RP_041214_02_B01, Mouse strain C57BL/6J (56 days, male) 18.2

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