MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:81.2 nTPM
HPA Brain:174.7 nTPM
GTEx:81.2 nTPM
FANTOM5:192.2 Scaled Tags Per Million
Pig:128.4 nTPM
Mouse:162.1 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 174.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.9
1827 Male, age 72, unknown 186.1
2411 Female, age 72, unknown 172.8
2828 Female, age 72, unknown 171.1
2666 Male, age 74, left hemisphere 163.4
2019 Male, age 18, unknown 162.4
2586 Male, age 75, left hemisphere 151.7
1833 Male, age 53, unknown 150.7
2219 Male, age 76, both hemispheres 150.4
1870 Female, age 42, unknown 148.3
1830 Male, age 51, unknown 142.0
Dorsal raphe nucleus
nTPM: 153.3
2298 Female, age 72, unknown 168.5
2750 Male, age 76, both hemispheres 152.8
2047 Male, age 72, unknown 151.7
1828 Male, age 53, unknown 147.0
2016 Female, age 72, unknown 146.3
Inferior colliculus
nTPM: 146.0
2097 Female, age 72, unknown 147.8
1848 Female, age 42, unknown 147.7
1890 Male, age 53, unknown 145.3
2849 Male, age 72, unknown 143.3
Median raphe nucleus
nTPM: 150.7
2220 Male, age 76, midline 150.7
Periaquaductal grey, anterior
nTPM: 165.3
1795 Male, age 51, unknown 178.7
1947 Male, age 18, unknown 169.8
2502 Female, age 75, unknown 147.3
Periaquaductal grey, dorsal
nTPM: 147.8
2850 Male, age 76, both hemispheres 156.3
1831 Male, age 72, unknown 152.3
2464 Female, age 72, unknown 143.4
1840 Male, age 53, unknown 139.0
Periaquaductal grey, lateral
nTPM: 170.5
2272 Male, age 74, both hemispheres 196.5
2053 Male, age 18, unknown 157.6
2140 Male, age 76, both hemispheres 157.4
Pretectal area
nTPM: 174.7
1816 Male, age 51, unknown 208.4
2007 Male, age 72, unknown 193.5
2667 Female, age 75, unknown 188.1
1944 Female, age 72, unknown 187.3
1817 Female, age 42, unknown 182.7
2273 Male, age 74, both hemispheres 182.5
1815 Male, age 53, unknown 172.1
2407 Male, age 75, both hemispheres 160.8
2224 Female, age 72, unknown 158.5
2825 Male, age 18, unknown 146.7
2316 Male, age 76, right hemisphere 141.6
Red nucleus
nTPM: 153.7
2785 Male, age 18, unknown 165.4
1821 Female, age 72, unknown 162.2
2588 Male, age 74, left hemisphere 159.3
2725 Female, age 75, unknown 159.1
2503 Female, age 72, unknown 157.5
1904 Male, age 53, unknown 153.1
2823 Male, age 76, right hemisphere 150.6
1954 Female, age 42, unknown 149.6
1865 Male, age 51, unknown 147.6
2769 Male, age 72, unknown 147.5
2584 Male, age 75, left hemisphere 146.8
2227 Male, age 72, unknown 145.1
Substantia nigra
nTPM: 165.4
1916 Female, age 42, unknown 194.4
1941 Male, age 53, unknown 181.9
1851 Male, age 51, unknown 177.0
1889 Female, age 72, unknown 167.9
2583 Male, age 75, right hemisphere 161.7
2590 Female, age 75, unknown 157.4
2699 Male, age 18, unknown 155.7
2409 Female, age 72, unknown 153.5
2665 Male, age 74, both hemispheres 152.6
2241 Male, age 72, unknown 151.8
Superior colliculus
nTPM: 162.4
2261 Male, age 18, unknown 192.5
1796 Male, age 53, unknown 184.9
2087 Female, age 72, unknown 174.9
2668 Female, age 75, unknown 168.5
1913 Female, age 42, unknown 159.8
2587 Male, age 74, left hemisphere 156.4
2664 Male, age 75, both hemispheres 149.3
1995 Male, age 72, unknown 147.8
1895 Male, age 76, right hemisphere 146.8
1839 Male, age 51, unknown 143.2
Ventral tegmental area
nTPM: 158.3
2410 Female, age 72, unknown 180.1
2218 Male, age 76, both hemispheres 163.8
1915 Female, age 42, unknown 162.4
1942 Male, age 51, unknown 148.8
2021 Male, age 53, unknown 148.6
2223 Female, age 72, unknown 146.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 81.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.2
Samples: 183

Max nTPM: 126.3
Min nTPM: 50.5
Std nTPM: 13.9
Median nTPM: 79.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 126.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 114.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 111.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 111.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 109.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 107.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 106.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 105.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 105.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 105.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 192.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.2
FF:10158-103A5 76 years, female 192.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 128.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.4
Samples: 4

Max nTPM: 152.5
Min nTPM: 104.0
Sample A Female 147.1
Sample B Female 104.0
Sample C Male 152.5
Sample D Male 109.9
Midbrain
nTPM: 128.4
Samples: 4

Max nTPM: 150.0
Min nTPM: 100.0
Sample A Female 150.0
Sample B Female 100.0
Sample C Male 147.7
Sample D Male 115.7
Periaqueductal gray
nTPM: 105.2
Samples: 3

Max nTPM: 119.7
Min nTPM: 96.5
Sample B Female 96.5
Sample C Male 119.7
Sample D Male 99.4
Superior colliculi
nTPM: 126.0
Samples: 4

Max nTPM: 131.7
Min nTPM: 117.7
Sample A Female 131.7
Sample B Female 117.7
Sample C Male 127.6
Sample D Male 127.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 162.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 162.1
Samples: 4

Max nTPM: 165.9
Min nTPM: 159.6
Sample A Male 159.6
Sample B Male 162.8
Sample C Female 165.9
Sample D Female 160.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70194486 Antisense, RP_050517_01_E04, Mouse strain C57BL/6J (56 days, male) 0.0

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