MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:299.6 nTPM
HPA Brain:408.5 nTPM
GTEx:299.6 nTPM
FANTOM5:480.6 Scaled Tags Per Million
Pig:304.5 nTPM
Mouse:304.9 nTPM
Allen mouse:10.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 408.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 386.4
2586 Male, age 75, left hemisphere 545.2
2666 Male, age 74, left hemisphere 466.1
2828 Female, age 72, unknown 407.4
1827 Male, age 72, unknown 402.0
1833 Male, age 53, unknown 374.5
1870 Female, age 42, unknown 369.6
1830 Male, age 51, unknown 347.0
2411 Female, age 72, unknown 334.9
2219 Male, age 76, both hemispheres 322.1
2019 Male, age 18, unknown 295.3
Dorsal raphe nucleus
nTPM: 351.9
2047 Male, age 72, unknown 385.3
1828 Male, age 53, unknown 382.0
2750 Male, age 76, both hemispheres 352.5
2298 Female, age 72, unknown 339.5
2016 Female, age 72, unknown 300.4
Inferior colliculus
nTPM: 331.3
2849 Male, age 72, unknown 419.4
1848 Female, age 42, unknown 347.4
1890 Male, age 53, unknown 284.8
2097 Female, age 72, unknown 273.4
Median raphe nucleus
nTPM: 407.6
2220 Male, age 76, midline 407.6
Periaquaductal grey, anterior
nTPM: 394.2
1947 Male, age 18, unknown 423.0
2502 Female, age 75, unknown 384.5
1795 Male, age 51, unknown 375.0
Periaquaductal grey, dorsal
nTPM: 326.6
2850 Male, age 76, both hemispheres 386.9
1840 Male, age 53, unknown 318.7
2464 Female, age 72, unknown 313.7
1831 Male, age 72, unknown 287.0
Periaquaductal grey, lateral
nTPM: 300.3
2053 Male, age 18, unknown 322.7
2140 Male, age 76, both hemispheres 313.6
2272 Male, age 74, both hemispheres 264.7
Pretectal area
nTPM: 344.9
1817 Female, age 42, unknown 403.7
1816 Male, age 51, unknown 392.7
2825 Male, age 18, unknown 390.7
2667 Female, age 75, unknown 384.5
1815 Male, age 53, unknown 366.3
2007 Male, age 72, unknown 349.4
1944 Female, age 72, unknown 339.9
2407 Male, age 75, both hemispheres 326.3
2224 Female, age 72, unknown 310.8
2316 Male, age 76, right hemisphere 286.1
2273 Male, age 74, both hemispheres 243.8
Red nucleus
nTPM: 362.5
1821 Female, age 72, unknown 433.5
2584 Male, age 75, left hemisphere 405.8
2769 Male, age 72, unknown 380.7
2227 Male, age 72, unknown 362.1
1954 Female, age 42, unknown 358.9
2823 Male, age 76, right hemisphere 357.8
1865 Male, age 51, unknown 357.6
2725 Female, age 75, unknown 356.8
2588 Male, age 74, left hemisphere 355.2
1904 Male, age 53, unknown 338.1
2503 Female, age 72, unknown 327.3
2785 Male, age 18, unknown 316.5
Substantia nigra
nTPM: 408.5
1916 Female, age 42, unknown 512.3
1941 Male, age 53, unknown 486.9
2699 Male, age 18, unknown 469.1
1851 Male, age 51, unknown 429.7
2665 Male, age 74, both hemispheres 413.8
2583 Male, age 75, right hemisphere 398.2
1889 Female, age 72, unknown 391.4
2241 Male, age 72, unknown 354.2
2590 Female, age 75, unknown 321.0
2409 Female, age 72, unknown 308.7
Superior colliculus
nTPM: 351.9
2664 Male, age 75, both hemispheres 468.8
2668 Female, age 75, unknown 402.8
1796 Male, age 53, unknown 378.4
1839 Male, age 51, unknown 363.6
2261 Male, age 18, unknown 332.2
2587 Male, age 74, left hemisphere 331.2
1895 Male, age 76, right hemisphere 325.6
2087 Female, age 72, unknown 323.4
1913 Female, age 42, unknown 314.7
1995 Male, age 72, unknown 278.1
Ventral tegmental area
nTPM: 360.7
1915 Female, age 42, unknown 408.6
2410 Female, age 72, unknown 386.8
2223 Female, age 72, unknown 381.0
2218 Male, age 76, both hemispheres 365.5
1942 Male, age 51, unknown 325.9
2021 Male, age 53, unknown 296.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 299.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 299.6
Samples: 183

Max nTPM: 591.1
Min nTPM: 154.0
Std nTPM: 65.3
Median nTPM: 291.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 591.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 473.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 443.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 436.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 435.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 435.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 423.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 423.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 423.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 417.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 414.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 480.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 480.6
FF:10158-103A5 76 years, female 480.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 304.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 291.6
Samples: 4

Max nTPM: 339.3
Min nTPM: 219.9
Sample A Female 339.3
Sample B Female 219.9
Sample C Male 336.6
Sample D Male 270.4
Midbrain
nTPM: 304.5
Samples: 4

Max nTPM: 397.7
Min nTPM: 263.4
Sample A Female 397.7
Sample B Female 263.4
Sample C Male 293.0
Sample D Male 264.0
Periaqueductal gray
nTPM: 236.7
Samples: 3

Max nTPM: 251.3
Min nTPM: 227.8
Sample B Female 231.0
Sample C Male 251.3
Sample D Male 227.8
Superior colliculi
nTPM: 292.4
Samples: 4

Max nTPM: 326.2
Min nTPM: 215.6
Sample A Female 312.4
Sample B Female 215.6
Sample C Male 326.2
Sample D Male 315.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 304.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 304.9
Samples: 4

Max nTPM: 322.3
Min nTPM: 297.4
Sample A Male 322.3
Sample B Male 297.4
Sample C Female 299.6
Sample D Female 300.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
69013750 Antisense, RP_050309_02_H09, Mouse strain C57BL/6J (56 days, male) 10.8

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