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  • WBP2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:284.6 nTPM
HPA Brain:343.4 nTPM
GTEx:284.6 nTPM
FANTOM5:458.7 Scaled Tags Per Million
Pig:384.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 333.0
2565 Male, age 75, midline 406.8
2194 Female, age 79, both hemispheres 342.6
2816 Male, age 47, midline 325.8
1981 Female, age 72, midline 321.9
2048 Male, age 55, midline 268.0
Cervical spinal cord, dorsal horn
nTPM: 324.4
2721 Male, age 90, both hemispheres 348.0
2296 Male, age 66, both hemispheres 346.3
2173 Female, age 72, unknown 334.9
2297 Male, age 75, both hemispheres 324.4
2069 Male, age 47, both hemispheres 302.3
1877 Male, age 55, unknown 290.4
Cervical spinal cord, ventral horn
nTPM: 343.4
2820 Female, age 79, both hemispheres 400.9
2068 Male, age 55, unknown 360.3
2480 Male, age 75, both hemispheres 355.6
2809 Male, age 90, both hemispheres 330.6
2098 Female, age 72, unknown 314.4
2295 Male, age 66, both hemispheres 298.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 284.6
Samples: 204

Max nTPM: 424.9
Min nTPM: 168.6
Std nTPM: 51.0
Median nTPM: 280.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 424.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 423.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 418.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 405.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 401.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 397.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 396.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 395.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 394.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 378.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 377.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 377.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 371.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 369.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 367.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 363.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 360.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 358.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 357.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 355.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 349.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 349.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 348.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 348.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 344.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 343.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 339.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 339.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 339.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 338.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 336.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 335.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 334.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 332.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 330.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 327.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 326.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 325.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 324.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 322.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 320.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 320.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 320.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 319.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 318.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 317.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 317.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 316.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 315.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 313.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 312.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 311.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 311.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 310.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 309.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 309.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 309.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 309.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 308.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 308.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 308.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 308.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 307.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 306.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 306.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 305.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 304.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 304.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 304.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 304.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 303.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 303.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 302.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 302.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 302.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 300.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 300.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 300.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 299.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 298.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 296.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 295.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 294.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 294.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 294.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 291.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 291.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 290.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 288.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 285.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 285.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 283.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 283.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 283.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 283.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 282.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 282.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 282.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 281.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 281.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 281.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 280.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 280.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 279.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 279.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 279.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 279.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 278.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 278.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 278.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 278.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 277.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 276.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 276.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 276.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 276.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 275.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 274.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 272.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 272.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 271.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 271.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 271.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 271.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 269.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 269.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 268.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 268.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 265.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 264.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 264.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 263.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 263.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 261.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 260.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 260.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 260.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 260.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 258.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 258.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 258.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 257.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 257.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 257.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 256.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 254.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 253.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 253.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 253.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 252.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 251.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 251.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 250.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 250.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 249.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 246.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 244.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 243.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 243.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 242.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 241.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 241.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 240.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 238.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 238.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 237.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 236.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 235.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 234.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 233.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 233.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 232.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 232.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 232.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 232.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 231.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 231.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 230.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 230.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 228.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 227.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 226.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 224.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 221.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 219.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 218.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 218.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 217.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 216.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 214.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 212.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 208.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 208.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 205.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 193.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 184.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 182.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 180.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 178.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 176.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 175.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 168.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

458.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 458.7
FF:10159-103A6 76 years, female 518.6
FF:10181-103D1 60 years, female 398.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

384.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 311.8
Samples: 4

Max nTPM: 347.5
Min nTPM: 291.5
Sample A Female 312.0
Sample B Female 291.5
Sample C Male 296.0
Sample D Male 347.5
Ventral spinal cord
nTPM: 384.6
Samples: 4

Max nTPM: 386.3
Min nTPM: 381.3
Sample A Female 384.7
Sample B Female 385.9
Sample C Male 381.3
Sample D Male 386.3

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