On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
883.6
nTPM
HPA Brain:
238.0
nTPM
GTEx:
883.6
nTPM
FANTOM5:
46.2
Scaled Tags Per Million
Macaque:
470.8
nTPM
Mouse:
123.7
nTPM
Rat:
110.0
nTPM
Pig:
128.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
35776
Sample
Intensity
Spinal cord_01
69970
Spinal cord_02
82658
Spinal cord_03
37705
Spinal cord_04
53868
Spinal cord_05
33847
Spinal cord_06
30558
Spinal cord_07
26212
Spinal cord_08
26216
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
238.0
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 223.3
2193
Male, age 75, both hemispheres
233.1
2819
Male, age 47, both hemispheres
230.5
2734
Male, age 80, both hemispheres
222.3
2818
Female, age 79, both hemispheres
207.2
Cervical spinal cord, central gray nTPM: 190.3
1981
Female, age 72, midline
239.5
2565
Male, age 75, midline
237.9
2048
Male, age 55, midline
214.8
2816
Male, age 47, midline
137.7
2194
Female, age 79, both hemispheres
122.0
Cervical spinal cord, dorsal horn nTPM: 231.0
2069
Male, age 47, both hemispheres
318.3
2173
Female, age 72, unknown
284.4
1877
Male, age 55, unknown
234.7
2296
Male, age 66, both hemispheres
234.3
2721
Male, age 90, both hemispheres
169.2
2297
Male, age 75, both hemispheres
145.4
Cervical spinal cord, ventral horn nTPM: 237.4
2098
Female, age 72, unknown
369.6
2809
Male, age 90, both hemispheres
293.3
2480
Male, age 75, both hemispheres
281.7
2068
Male, age 55, unknown
205.5
2295
Male, age 66, both hemispheres
178.4
2820
Female, age 79, both hemispheres
95.6
Dorsal funiculus (white matter) nTPM: 192.3
2812
Male, age 66, both hemispheres
226.2
2128
Male, age 75, both hemispheres
203.8
2810
Male, age 90, both hemispheres
192.1
2817
Male, age 47, both hemispheres
172.1
2064
Female, age 79, both hemispheres
167.2
Lateral funiculus (white matter) nTPM: 238.0
2192
Male, age 75, both hemispheres
245.1
2094
Female, age 79, both hemispheres
241.5
2294
Male, age 66, both hemispheres
233.6
2099
Male, age 90, both hemispheres
231.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
883.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 883.6
Samples: 204
Max nTPM: 1876.3
Min nTPM: 369.0
Std nTPM: 256.4
Median nTPM: 852.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
1876.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1598.4
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1581.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1555.1
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1504.5
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1490.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1404.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1398.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1385.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1378.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1363.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1353.6
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1339.9
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1337.0
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1332.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1320.0
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1294.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1262.1
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1248.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1238.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1232.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1210.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1203.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1199.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1190.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1190.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1187.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1178.7
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1173.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1161.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1128.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1116.4
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1115.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1115.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1104.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1104.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1101.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1085.3
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1082.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1079.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1063.2
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1062.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1062.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1058.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1045.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1040.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1039.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1039.1
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1038.9
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1037.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1032.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1021.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1017.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1013.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1011.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1010.9
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1009.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1002.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
996.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
988.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
982.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
977.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
974.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
970.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
967.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
966.8
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
966.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
964.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
964.9
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
964.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
962.3
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
955.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
953.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
951.1
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
950.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
941.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
940.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
933.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
930.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
927.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
927.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
927.0
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
925.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
919.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
918.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
907.3
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
906.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
906.4
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
906.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
900.3
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
898.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
894.7
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
887.0
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
884.8
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
877.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
875.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
871.1
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
867.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
864.2
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
864.2
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
856.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
853.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
852.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
850.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
850.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
845.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
844.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
838.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
834.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
833.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
832.3
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
831.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
828.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
827.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
825.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
824.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
820.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
819.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
819.7
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
810.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
797.3
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
792.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
790.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
790.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
789.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
782.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
778.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
771.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
769.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
758.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
758.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
754.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
752.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
746.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
743.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
741.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
739.5
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
734.7
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
727.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
725.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
724.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
722.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
716.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
715.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
709.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
709.0
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
706.5
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
705.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
704.3
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
703.5
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
702.3
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
700.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
700.5
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
698.1
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
693.3
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
691.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
687.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
681.5
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
681.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
671.2
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
668.2
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
659.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
659.5
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
657.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
655.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
652.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
649.0
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
645.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
643.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
637.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
635.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
630.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
630.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
628.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
626.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
626.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
623.8
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
618.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
612.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
597.6
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
593.5
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
591.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
588.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
576.1
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
571.7
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
570.8
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
570.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
570.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
552.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
546.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
539.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
539.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
538.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
535.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
526.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
514.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
511.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
508.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
499.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
475.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
467.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
467.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
420.3
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
369.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
470.8
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 369.7
Samples: 2
Max nTPM: 395.2
Min nTPM: 344.1
Sample A
395.2
Sample B
344.1
Ventral spinal cord nTPM: 470.8
Samples: 1
Max nTPM: 470.8
Min nTPM: 470.8
Sample A
470.8
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 128.4
Samples: 4
Max nTPM: 194.0
Min nTPM: 80.5
Sample A
Female
89.0
Sample B
Female
149.9
Sample C
Male
194.0
Sample D
Male
80.5
Ventral spinal cord nTPM: 100.7
Samples: 4
Max nTPM: 124.2
Min nTPM: 91.4
Sample A
Female
92.3
Sample B
Female
94.9
Sample C
Male
124.2
Sample D
Male
91.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 123.7
Samples: 4
Max nTPM: 135.2
Min nTPM: 108.9
Sample A
135.2
Sample B
108.9
Sample C
121.0
Sample D
129.8
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 110.0
Samples: 4
Max nTPM: 113.9
Min nTPM: 107.1
Sample A
110.4
Sample A
108.4
Sample A
113.9
Sample A
107.1
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The Human Protein Atlas project is funded
