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  • FAIM2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:171.2 nTPM
HPA Brain:480.4 nTPM
GTEx:171.2 nTPM
FANTOM5:450.5 Scaled Tags Per Million
Pig:344.4 nTPM
Mouse:160.0 nTPM
Allen mouse:22.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

480.4
Sample id Sample description nTPM
Amygdala
nTPM: 414.5
2814 Male, age 76, right hemisphere 639.1
2517 Female, age 94, left hemisphere 430.1
1987 Female, age 91, left hemisphere 378.9
2514 Male, age 75, right hemisphere 318.8
2695 Female, age 67, right hemisphere 305.5
Basal amygdala
nTPM: 480.4
2685 Female, age 94, left hemisphere 561.1
1955 Male, age 76, both hemispheres 527.2
2110 Male, age 80, left hemisphere 503.8
2243 Female, age 91, right hemisphere 480.8
2827 Female, age 67, right hemisphere 407.4
2609 Male, age 75, right hemisphere 402.1
Central amygdala
nTPM: 474.2
1905 Male, age 76, both hemispheres 597.0
2239 Male, age 80, left hemisphere 501.3
2826 Female, age 94, left hemisphere 487.2
2701 Female, age 91, right hemisphere 424.1
2515 Male, age 75, right hemisphere 361.6
Corticomedial amygdala
nTPM: 459.8
2829 Male, age 80, left hemisphere 563.0
2240 Male, age 76, both hemispheres 557.7
2429 Female, age 94, left hemisphere 467.0
2242 Female, age 91, right hemisphere 428.5
2535 Female, age 67, right hemisphere 419.0
2428 Male, age 75, right hemisphere 323.5
Lateral amygdala
nTPM: 437.5
1883 Male, age 76, both hemispheres 556.1
2534 Female, age 94, left hemisphere 555.7
2256 Male, age 80, left hemisphere 443.7
2255 Female, age 91, right hemisphere 389.0
2516 Male, age 75, right hemisphere 345.6
2830 Female, age 67, right hemisphere 334.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 171.2
Samples: 181

Max nTPM: 390.4
Min nTPM: 58.8
Std nTPM: 53.4
Median nTPM: 163.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 390.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 332.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 332.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 308.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 304.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 284.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 281.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 281.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 277.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 273.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 265.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 264.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 264.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 264.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 255.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 253.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 250.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 246.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 243.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 241.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 237.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 233.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 233.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 231.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 225.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 223.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 222.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 222.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 218.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 217.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 216.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 214.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 213.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 210.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 209.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 209.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 207.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 206.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 203.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 203.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 203.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 200.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 200.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 200.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 199.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 197.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 197.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 195.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 195.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 193.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 193.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 193.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 193.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 189.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 189.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 188.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 188.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 185.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 185.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 184.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 184.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 183.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 183.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 181.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 180.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 176.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 176.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 176.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 174.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 174.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 173.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 173.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 172.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 172.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 171.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 169.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 168.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 168.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 167.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 166.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 166.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 165.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 165.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 165.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 163.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 162.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 161.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 161.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 160.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 160.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 158.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 157.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 157.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 155.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 155.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 154.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 152.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 152.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 152.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 152.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 150.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 149.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 149.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 149.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 147.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 143.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 142.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 142.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 141.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 141.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 141.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 141.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 140.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 139.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 138.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 138.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 137.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 136.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 135.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 134.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 134.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 133.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 133.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 132.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 131.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 130.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 129.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 129.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 127.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 119.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 118.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 117.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 115.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 115.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 114.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 113.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 112.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 112.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 110.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 108.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 105.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 104.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 103.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 101.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 101.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 99.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 99.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 94.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 94.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 88.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 88.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 87.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 58.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

450.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 450.5
FF:10151-102I7 76 years, female 450.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

344.4
Pig sample Sample description nTPM
Amygdala
nTPM: 344.4
Samples: 4

Max nTPM: 475.8
Min nTPM: 267.3
Sample A Female 475.8
Sample B Female 267.3
Sample C Male 298.2
Sample D Male 336.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 159.9
Samples: 4

Max nTPM: 173.0
Min nTPM: 147.2
Sample A Male 173.0
Sample B Male 147.2
Sample C Female 168.6
Sample D Female 150.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
385775 Antisense, RP_040625_01_E03, Mouse strain C57BL/6J (56 days, male) 22.0

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