On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
156.4
nTPM
HPA Brain:
494.6
nTPM
GTEx:
156.4
nTPM
FANTOM5:
363.5
Scaled Tags Per Million
Macaque:
606.5
nTPM
Mouse:
240.6
nTPM
Rat:
485.6
nTPM
Pig:
491.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
494.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 442.7
2666
Male, age 74, left hemisphere
533.2
1827
Male, age 72, unknown
503.3
2586
Male, age 75, left hemisphere
475.2
2019
Male, age 18, unknown
470.3
2828
Female, age 72, unknown
436.3
1833
Male, age 53, unknown
411.7
2411
Female, age 72, unknown
409.1
2219
Male, age 76, both hemispheres
403.6
1870
Female, age 42, unknown
397.2
1830
Male, age 51, unknown
387.1
Dorsal raphe nucleus nTPM: 391.6
2298
Female, age 72, unknown
473.0
2750
Male, age 76, both hemispheres
408.5
2047
Male, age 72, unknown
406.2
1828
Male, age 53, unknown
380.9
2016
Female, age 72, unknown
289.4
Inferior colliculus nTPM: 441.5
2849
Male, age 72, unknown
473.6
1848
Female, age 42, unknown
468.1
2097
Female, age 72, unknown
454.2
1890
Male, age 53, unknown
370.0
Median raphe nucleus nTPM: 494.6
2220
Male, age 76, midline
494.6
Periaquaductal grey, anterior nTPM: 493.7
2502
Female, age 75, unknown
509.2
1947
Male, age 18, unknown
496.7
1795
Male, age 51, unknown
475.1
Periaquaductal grey, dorsal nTPM: 349.7
1840
Male, age 53, unknown
372.1
2464
Female, age 72, unknown
367.0
1831
Male, age 72, unknown
337.0
2850
Male, age 76, both hemispheres
322.6
Periaquaductal grey, lateral nTPM: 319.6
2053
Male, age 18, unknown
338.2
2140
Male, age 76, both hemispheres
327.0
2272
Male, age 74, both hemispheres
293.7
Pretectal area nTPM: 494.0
1816
Male, age 51, unknown
634.8
1817
Female, age 42, unknown
618.4
2667
Female, age 75, unknown
607.8
1944
Female, age 72, unknown
604.4
2007
Male, age 72, unknown
593.0
1815
Male, age 53, unknown
512.6
2224
Female, age 72, unknown
425.9
2407
Male, age 75, both hemispheres
406.9
2825
Male, age 18, unknown
403.2
2316
Male, age 76, right hemisphere
326.7
2273
Male, age 74, both hemispheres
299.9
Red nucleus nTPM: 393.4
2785
Male, age 18, unknown
465.5
2584
Male, age 75, left hemisphere
454.9
1821
Female, age 72, unknown
426.0
2588
Male, age 74, left hemisphere
409.0
1954
Female, age 42, unknown
393.8
2227
Male, age 72, unknown
391.6
1865
Male, age 51, unknown
387.1
2823
Male, age 76, right hemisphere
387.0
2769
Male, age 72, unknown
378.0
1904
Male, age 53, unknown
362.0
2503
Female, age 72, unknown
352.2
2725
Female, age 75, unknown
313.9
Substantia nigra nTPM: 406.0
1941
Male, age 53, unknown
547.7
1889
Female, age 72, unknown
523.4
1916
Female, age 42, unknown
514.3
1851
Male, age 51, unknown
407.3
2665
Male, age 74, both hemispheres
407.0
2241
Male, age 72, unknown
381.3
2583
Male, age 75, right hemisphere
377.1
2699
Male, age 18, unknown
311.3
2409
Female, age 72, unknown
304.4
2590
Female, age 75, unknown
285.9
Superior colliculus nTPM: 471.2
2668
Female, age 75, unknown
609.6
2087
Female, age 72, unknown
545.7
2664
Male, age 75, both hemispheres
533.5
1796
Male, age 53, unknown
518.8
2261
Male, age 18, unknown
515.5
1895
Male, age 76, right hemisphere
473.0
1839
Male, age 51, unknown
436.9
2587
Male, age 74, left hemisphere
379.7
1913
Female, age 42, unknown
377.8
1995
Male, age 72, unknown
321.2
Ventral tegmental area nTPM: 410.2
2218
Male, age 76, both hemispheres
470.9
2410
Female, age 72, unknown
449.1
2223
Female, age 72, unknown
431.6
1915
Female, age 42, unknown
411.4
1942
Male, age 51, unknown
377.4
2021
Male, age 53, unknown
320.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 156.4
Samples: 183
Max nTPM: 578.8
Min nTPM: 46.2
Std nTPM: 71.8
Median nTPM: 139.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
578.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
468.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
338.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
336.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
316.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
302.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
288.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
283.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
273.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
271.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
266.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
264.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
260.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
259.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
256.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
254.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
253.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
252.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
248.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
248.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
248.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
245.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
240.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
238.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
236.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
236.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
235.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
230.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
223.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
222.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
222.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
219.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
216.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
215.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
214.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
204.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
201.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
200.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
200.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
199.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
197.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
195.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
193.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
193.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
190.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
189.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
189.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
187.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
185.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
185.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
184.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
183.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
181.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
180.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
179.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
176.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
175.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
175.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
174.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
171.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
170.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
169.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
169.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
169.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
166.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
166.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
164.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
164.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
164.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
161.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
161.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
158.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
157.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
156.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
152.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
151.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
151.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
151.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
150.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
150.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
149.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
148.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
148.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
145.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
144.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
144.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
143.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
143.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
143.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
142.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
141.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
139.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
139.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
139.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
137.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
136.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
135.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
133.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
130.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
129.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
129.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
129.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
129.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
128.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
128.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
128.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
127.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
127.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
126.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
126.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
126.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
125.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
123.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
123.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
123.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
122.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
121.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
121.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
118.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
117.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
116.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
116.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
115.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
114.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
114.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
112.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
111.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
110.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
109.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
109.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
108.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
108.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
107.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
107.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
105.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
104.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
104.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
104.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
103.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
103.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
102.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
102.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
102.4
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
101.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
101.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
101.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
100.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
100.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
99.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
97.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
97.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
97.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
96.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
96.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
95.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
93.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
93.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
92.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
89.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
88.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
88.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
87.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
87.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
86.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
85.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
84.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
84.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
84.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
83.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
83.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
82.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
81.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
80.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
79.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
78.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
74.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
72.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
70.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
67.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
65.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
64.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
60.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
46.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
606.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 280.4
Samples: 1
Max nTPM: 280.4
Min nTPM: 280.4
Sample A
280.4
Midbrain nTPM: 349.7
Samples: 1
Max nTPM: 349.7
Min nTPM: 349.7
Sample A
349.7
Superior colliculi nTPM: 606.5
Samples: 1
Max nTPM: 606.5
Min nTPM: 606.5
Sample A
606.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
491.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 379.3
Samples: 3
Max nTPM: 447.5
Min nTPM: 247.7
Sample A
Female
447.5
Sample B
Female
247.7
Sample C
Male
442.7
Midbrain nTPM: 486.3
Samples: 3
Max nTPM: 625.1
Min nTPM: 301.5
Sample B
Female
301.5
Sample C
Male
625.1
Sample D
Male
532.3
Periaqueductal gray nTPM: 329.3
Samples: 3
Max nTPM: 385.1
Min nTPM: 296.6
Sample B
Female
296.6
Sample C
Male
385.1
Sample D
Male
306.1
Superior colliculi nTPM: 491.3
Samples: 4
Max nTPM: 634.2
Min nTPM: 232.9
Sample A
Female
540.7
Sample B
Female
232.9
Sample C
Male
634.2
Sample D
Male
557.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
240.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 240.7
Samples: 4
Max nTPM: 271.1
Min nTPM: 200.7
Sample A
200.7
Sample B
254.8
Sample C
271.1
Sample D
236.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
485.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 485.6
Samples: 4
Max nTPM: 542.7
Min nTPM: 405.6
Sample A
491.6
Sample A
542.7
Sample A
502.4
Sample A
405.6
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The Human Protein Atlas project is funded
