On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1383.2
nTPM
HPA Brain:
613.6
nTPM
GTEx:
1383.2
nTPM
FANTOM5:
372.7
Scaled Tags Per Million
Macaque:
160.7
nTPM
Mouse:
72.3
nTPM
Rat:
1.5
nTPM
Pig:
414.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
21026
Sample
Intensity
Spinal cord_01
36039
Spinal cord_02
24920
Spinal cord_03
13243
Spinal cord_04
36529
Spinal cord_05
20349
Spinal cord_06
18634
Spinal cord_07
21001
Spinal cord_08
21051
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
613.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 538.1
2193
Male, age 75, both hemispheres
579.1
2734
Male, age 80, both hemispheres
560.4
2819
Male, age 47, both hemispheres
545.8
2818
Female, age 79, both hemispheres
467.2
Cervical spinal cord, central gray nTPM: 518.9
2565
Male, age 75, midline
663.3
1981
Female, age 72, midline
609.3
2194
Female, age 79, both hemispheres
458.2
2048
Male, age 55, midline
455.4
2816
Male, age 47, midline
408.4
Cervical spinal cord, dorsal horn nTPM: 560.2
2069
Male, age 47, both hemispheres
697.5
2173
Female, age 72, unknown
616.5
2296
Male, age 66, both hemispheres
570.7
1877
Male, age 55, unknown
543.6
2721
Male, age 90, both hemispheres
472.8
2297
Male, age 75, both hemispheres
460.3
Cervical spinal cord, ventral horn nTPM: 613.6
2480
Male, age 75, both hemispheres
780.7
2809
Male, age 90, both hemispheres
752.8
2098
Female, age 72, unknown
729.1
2295
Male, age 66, both hemispheres
546.1
2068
Male, age 55, unknown
535.5
2820
Female, age 79, both hemispheres
337.2
Dorsal funiculus (white matter) nTPM: 501.7
2810
Male, age 90, both hemispheres
520.6
2128
Male, age 75, both hemispheres
513.3
2812
Male, age 66, both hemispheres
511.2
2817
Male, age 47, both hemispheres
488.9
2064
Female, age 79, both hemispheres
474.8
Lateral funiculus (white matter) nTPM: 575.4
2094
Female, age 79, both hemispheres
616.0
2294
Male, age 66, both hemispheres
591.0
2192
Male, age 75, both hemispheres
586.3
2099
Male, age 90, both hemispheres
508.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1383.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1383.2
Samples: 204
Max nTPM: 3987.6
Min nTPM: 577.2
Std nTPM: 511.2
Median nTPM: 1299.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
3987.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3266.8
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
2625.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
2588.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
2471.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
2376.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
2363.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2313.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
2313.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
2310.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2292.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
2285.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
2269.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
2268.6
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
2218.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2200.6
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
2180.8
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
2176.8
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
2154.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
2092.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
2091.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
2056.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
2041.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
2019.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
2013.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
2004.3
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1996.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1976.2
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1961.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1956.9
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1847.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1845.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1842.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1814.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1801.4
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1796.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1792.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1785.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1783.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1779.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1778.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1762.1
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1754.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1734.4
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1714.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1709.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1705.3
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1694.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1693.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1659.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1641.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1630.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1629.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1613.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1612.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1608.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1590.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1588.2
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1584.2
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1583.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1582.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1578.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1560.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1558.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1557.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1553.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1532.6
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1529.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1526.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1512.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1510.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1508.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1504.0
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1502.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1488.4
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1484.8
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1476.3
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1475.0
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1474.4
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1468.1
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1462.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1453.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1437.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1428.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1421.6
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1399.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1382.4
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1380.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
1379.8
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1370.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1369.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1368.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1364.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1360.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1356.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1352.7
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1348.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1348.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1337.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1324.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1317.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1305.0
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
1293.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
1288.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1286.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1282.1
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1278.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1274.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1271.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1271.2
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1263.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1261.5
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1261.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1246.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1241.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1239.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1224.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
1215.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1214.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1212.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1209.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1197.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1174.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1173.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1170.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1163.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1160.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1157.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1156.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1153.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1144.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1130.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1126.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1124.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1121.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1110.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1109.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1108.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1104.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1101.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1082.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1082.2
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1075.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1072.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1066.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1066.5
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1064.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1061.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1053.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
1033.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
1030.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1019.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1013.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
996.4
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
994.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
991.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
986.9
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
984.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
975.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
967.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
959.1
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
955.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
954.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
941.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
928.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
918.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
902.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
900.2
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
897.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
884.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
879.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
865.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
860.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
859.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
854.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
853.6
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
850.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
849.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
833.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
826.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
824.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
814.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
799.6
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
796.5
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
791.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
785.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
762.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
758.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
756.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
749.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
741.4
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
736.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
733.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
731.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
715.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
710.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
704.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
680.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
670.3
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
646.9
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
629.5
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
629.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
607.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
577.2
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
160.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 126.0
Samples: 2
Max nTPM: 165.6
Min nTPM: 86.4
Sample A
86.4
Sample B
165.6
Ventral spinal cord nTPM: 160.7
Samples: 1
Max nTPM: 160.7
Min nTPM: 160.7
Sample A
160.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
414.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 414.8
Samples: 4
Max nTPM: 585.5
Min nTPM: 310.8
Sample A
Female
314.6
Sample B
Female
448.5
Sample C
Male
585.5
Sample D
Male
310.8
Ventral spinal cord nTPM: 356.6
Samples: 4
Max nTPM: 421.9
Min nTPM: 309.5
Sample A
Female
309.5
Sample B
Female
371.6
Sample C
Male
421.9
Sample D
Male
323.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 72.3
Samples: 4
Max nTPM: 80.8
Min nTPM: 60.3
Sample A
80.8
Sample B
60.3
Sample C
70.5
Sample D
77.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.5
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 1.5
Samples: 4
Max nTPM: 2.6
Min nTPM: 0.4
Sample A
0.4
Sample A
2.6
Sample A
1.3
Sample A
1.8
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
