On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1829.7
nTPM
HPA Brain:
795.6
nTPM
GTEx:
1829.7
nTPM
FANTOM5:
293.2
Scaled Tags Per Million
Macaque:
579.9
nTPM
Mouse:
341.9
nTPM
Rat:
0.0
nTPM
Pig:
98.5
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
33639
Sample
Intensity
Spinal cord_01
94166
Spinal cord_02
64711
Spinal cord_03
28280
Spinal cord_04
45153
Spinal cord_05
28595
Spinal cord_06
32611
Spinal cord_07
34666
Spinal cord_08
18808
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
795.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 703.5
2734
Male, age 80, both hemispheres
753.7
2818
Female, age 79, both hemispheres
701.8
2819
Male, age 47, both hemispheres
680.0
2193
Male, age 75, both hemispheres
678.3
Cervical spinal cord, central gray nTPM: 636.8
2565
Male, age 75, midline
746.4
1981
Female, age 72, midline
715.5
2048
Male, age 55, midline
628.6
2816
Male, age 47, midline
558.8
2194
Female, age 79, both hemispheres
534.7
Cervical spinal cord, dorsal horn nTPM: 587.0
2173
Female, age 72, unknown
826.9
2296
Male, age 66, both hemispheres
656.3
2069
Male, age 47, both hemispheres
636.6
1877
Male, age 55, unknown
593.8
2721
Male, age 90, both hemispheres
434.5
2297
Male, age 75, both hemispheres
373.7
Cervical spinal cord, ventral horn nTPM: 795.6
2480
Male, age 75, both hemispheres
1064.4
2809
Male, age 90, both hemispheres
974.0
2098
Female, age 72, unknown
876.7
2295
Male, age 66, both hemispheres
779.5
2068
Male, age 55, unknown
602.3
2820
Female, age 79, both hemispheres
476.9
Dorsal funiculus (white matter) nTPM: 680.1
2810
Male, age 90, both hemispheres
751.3
2817
Male, age 47, both hemispheres
705.7
2064
Female, age 79, both hemispheres
697.1
2812
Male, age 66, both hemispheres
636.6
2128
Male, age 75, both hemispheres
609.6
Lateral funiculus (white matter) nTPM: 676.6
2094
Female, age 79, both hemispheres
795.7
2192
Male, age 75, both hemispheres
676.8
2099
Male, age 90, both hemispheres
624.3
2294
Male, age 66, both hemispheres
609.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1829.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1829.7
Samples: 204
Max nTPM: 4442.7
Min nTPM: 630.8
Std nTPM: 602.6
Median nTPM: 1698.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
4442.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
3382.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
3360.7
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3350.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
3301.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
3214.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
3201.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
3167.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
3159.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
3038.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
3010.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
2918.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
2892.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2831.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
2812.7
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
2781.8
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
2757.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
2741.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
2722.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
2713.6
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
2693.1
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2690.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
2679.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
2664.2
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2650.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
2648.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2607.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
2603.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
2552.3
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
2513.6
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
2501.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
2485.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
2441.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
2436.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
2428.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
2397.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
2358.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
2315.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
2310.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
2306.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
2305.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
2300.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
2277.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
2247.7
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
2242.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
2236.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
2223.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
2216.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
2175.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
2169.3
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
2133.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
2099.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
2090.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
2072.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
2071.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
2054.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
2050.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
2049.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
2030.2
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
2020.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2017.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
2012.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
2010.3
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
2010.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1997.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1986.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1977.1
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1971.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1970.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1965.2
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1962.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1957.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1954.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1947.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1920.8
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1899.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1894.1
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1886.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1886.4
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1879.1
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1872.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1863.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1859.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1852.1
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1844.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1833.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1819.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1812.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1770.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1768.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1753.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1749.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1749.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1748.4
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1740.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1737.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1732.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1713.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1711.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1707.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1706.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1700.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1696.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1688.0
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1679.5
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1675.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1672.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
1668.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1658.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1657.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1656.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1655.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1651.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1642.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1639.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1633.9
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1632.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1631.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1630.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1626.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1619.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1614.9
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1612.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1605.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1599.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1590.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1589.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1588.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1574.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1573.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1542.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1536.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1536.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1535.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1530.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1527.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1522.7
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1486.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1483.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1476.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1472.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1469.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1462.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1458.3
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1448.3
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1441.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1433.4
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1426.7
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1412.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1409.6
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1407.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1402.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1396.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1392.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1379.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1378.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1377.7
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1374.1
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1372.1
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
1359.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
1355.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1349.4
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
1346.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
1346.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1331.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
1324.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
1319.1
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1309.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1302.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
1294.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1289.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1277.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1267.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
1255.8
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
1245.1
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1242.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
1239.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
1239.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
1236.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1222.7
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1205.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
1202.4
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
1185.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1184.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
1168.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
1138.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1133.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
1115.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1113.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1106.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1104.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
1054.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1038.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
1026.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
1016.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1016.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
974.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
974.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
963.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
957.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
951.7
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
899.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
772.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
630.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
579.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 502.2
Samples: 2
Max nTPM: 528.8
Min nTPM: 475.6
Sample A
475.6
Sample B
528.8
Ventral spinal cord nTPM: 579.9
Samples: 1
Max nTPM: 579.9
Min nTPM: 579.9
Sample A
579.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.5
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 98.5
Samples: 4
Max nTPM: 138.9
Min nTPM: 68.9
Sample A
Female
68.9
Sample B
Female
110.9
Sample C
Male
138.9
Sample D
Male
75.4
Ventral spinal cord nTPM: 85.9
Samples: 4
Max nTPM: 95.9
Min nTPM: 65.7
Sample A
Female
65.7
Sample B
Female
91.4
Sample C
Male
95.9
Sample D
Male
90.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
341.9
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 341.9
Samples: 4
Max nTPM: 352.0
Min nTPM: 329.8
Sample A
352.0
Sample B
329.8
Sample C
336.1
Sample D
349.5
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
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The Human Protein Atlas project is funded
