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  • RPS2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:733.9 nTPM
HPA Brain:427.8 nTPM
GTEx:733.9 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Mouse:745.4 nTPM
Allen mouse:23.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.8
Sample id Sample description nTPM
Amygdala
nTPM: 427.8
2695 Female, age 67, right hemisphere 489.5
2514 Male, age 75, right hemisphere 465.5
1987 Female, age 91, left hemisphere 411.9
2517 Female, age 94, left hemisphere 402.7
2814 Male, age 76, right hemisphere 369.6
Basal amygdala
nTPM: 398.8
2827 Female, age 67, right hemisphere 528.6
2609 Male, age 75, right hemisphere 429.8
2243 Female, age 91, right hemisphere 377.6
2110 Male, age 80, left hemisphere 361.1
2685 Female, age 94, left hemisphere 354.2
1955 Male, age 76, both hemispheres 341.6
Central amygdala
nTPM: 415.7
2826 Female, age 94, left hemisphere 614.8
2515 Male, age 75, right hemisphere 464.9
2239 Male, age 80, left hemisphere 341.9
1905 Male, age 76, both hemispheres 333.0
2701 Female, age 91, right hemisphere 324.1
Corticomedial amygdala
nTPM: 389.8
2428 Male, age 75, right hemisphere 455.4
2535 Female, age 67, right hemisphere 440.3
2242 Female, age 91, right hemisphere 394.8
2829 Male, age 80, left hemisphere 360.0
2429 Female, age 94, left hemisphere 351.3
2240 Male, age 76, both hemispheres 337.2
Lateral amygdala
nTPM: 425.9
2830 Female, age 67, right hemisphere 581.2
2534 Female, age 94, left hemisphere 464.4
2516 Male, age 75, right hemisphere 425.5
2256 Male, age 80, left hemisphere 410.8
2255 Female, age 91, right hemisphere 340.9
1883 Male, age 76, both hemispheres 332.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

733.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 733.9
Samples: 181

Max nTPM: 1440.6
Min nTPM: 398.0
Std nTPM: 219.1
Median nTPM: 690.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1440.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1420.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1401.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1328.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1295.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1272.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1270.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1261.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1257.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1233.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1195.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1190.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1166.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1137.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1124.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1116.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1097.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1092.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1037.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1025.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1025.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1009.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 997.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 988.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 981.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 959.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 956.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 954.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 948.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 940.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 911.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 903.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 903.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 895.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 878.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 877.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 876.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 865.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 862.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 857.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 846.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 842.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 833.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 830.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 822.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 820.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 815.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 813.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 812.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 808.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 803.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 796.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 789.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 780.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 776.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 769.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 765.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 761.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 760.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 754.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 747.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 747.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 745.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 743.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 740.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 737.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 736.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 729.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 725.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 724.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 722.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 720.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 717.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 716.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 712.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 711.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 710.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 706.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 705.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 704.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 703.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 702.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 702.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 701.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 701.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 696.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 695.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 693.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 692.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 690.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 690.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 689.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 688.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 685.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 684.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 682.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 678.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 675.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 672.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 671.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 671.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 663.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 655.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 648.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 647.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 647.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 646.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 644.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 641.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 640.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 637.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 636.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 635.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 631.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 629.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 624.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 623.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 623.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 621.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 620.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 617.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 617.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 610.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 609.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 608.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 608.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 602.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 602.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 601.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 598.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 597.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 596.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 594.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 594.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 591.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 589.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 586.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 585.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 578.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 575.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 574.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 569.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 569.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 569.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 567.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 562.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 555.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 554.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 554.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 551.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 551.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 550.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 547.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 545.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 544.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 543.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 532.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 523.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 521.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 517.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 517.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 515.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 511.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 500.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 500.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 496.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 491.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 482.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 479.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 476.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 472.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 469.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 464.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 452.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 450.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 445.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 440.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 428.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 419.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 398.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 398.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.1
FF:10151-102I7 76 years, female 15.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

745.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 745.4
Samples: 4

Max nTPM: 804.2
Min nTPM: 703.0
Sample A Male 703.0
Sample B Male 742.5
Sample C Female 804.2
Sample D Female 731.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

23.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.3
100146146 Antisense, RP_110623_01_A03, Mouse strain C57BL/6J (56 days, male) 23.3

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