MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:673.2 nTPM
HPA Brain:424.7 nTPM
GTEx:673.2 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Mouse:339.8 nTPM
Allen mouse:17.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 424.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 394.0
2586 Male, age 75, left hemisphere 490.5
2666 Male, age 74, left hemisphere 472.9
2828 Female, age 72, unknown 421.6
1870 Female, age 42, unknown 386.3
2019 Male, age 18, unknown 378.0
1830 Male, age 51, unknown 376.4
1833 Male, age 53, unknown 373.7
2411 Female, age 72, unknown 373.5
1827 Male, age 72, unknown 358.9
2219 Male, age 76, both hemispheres 307.7
Dorsal raphe nucleus
nTPM: 374.8
2016 Female, age 72, unknown 411.5
2298 Female, age 72, unknown 383.2
2750 Male, age 76, both hemispheres 368.1
1828 Male, age 53, unknown 357.5
2047 Male, age 72, unknown 353.6
Inferior colliculus
nTPM: 352.3
2849 Male, age 72, unknown 381.3
1890 Male, age 53, unknown 355.4
1848 Female, age 42, unknown 354.6
2097 Female, age 72, unknown 317.9
Median raphe nucleus
nTPM: 369.9
2220 Male, age 76, midline 369.9
Periaquaductal grey, anterior
nTPM: 378.9
2502 Female, age 75, unknown 422.4
1795 Male, age 51, unknown 376.2
1947 Male, age 18, unknown 338.1
Periaquaductal grey, dorsal
nTPM: 364.0
2850 Male, age 76, both hemispheres 398.2
1840 Male, age 53, unknown 363.8
1831 Male, age 72, unknown 355.3
2464 Female, age 72, unknown 338.7
Periaquaductal grey, lateral
nTPM: 355.3
2272 Male, age 74, both hemispheres 368.2
2053 Male, age 18, unknown 358.7
2140 Male, age 76, both hemispheres 339.1
Pretectal area
nTPM: 355.3
1817 Female, age 42, unknown 393.8
2007 Male, age 72, unknown 381.2
2407 Male, age 75, both hemispheres 380.0
1815 Male, age 53, unknown 375.9
2825 Male, age 18, unknown 362.8
2316 Male, age 76, right hemisphere 362.6
2273 Male, age 74, both hemispheres 347.5
1816 Male, age 51, unknown 345.0
2224 Female, age 72, unknown 338.3
1944 Female, age 72, unknown 315.1
2667 Female, age 75, unknown 306.3
Red nucleus
nTPM: 394.7
2584 Male, age 75, left hemisphere 462.4
1865 Male, age 51, unknown 438.2
2503 Female, age 72, unknown 436.2
1904 Male, age 53, unknown 428.3
2769 Male, age 72, unknown 393.0
1821 Female, age 72, unknown 392.6
2227 Male, age 72, unknown 391.7
2725 Female, age 75, unknown 379.3
2785 Male, age 18, unknown 376.8
1954 Female, age 42, unknown 359.0
2823 Male, age 76, right hemisphere 342.1
2588 Male, age 74, left hemisphere 337.4
Substantia nigra
nTPM: 424.7
2699 Male, age 18, unknown 559.6
2665 Male, age 74, both hemispheres 520.1
1851 Male, age 51, unknown 489.9
2590 Female, age 75, unknown 434.8
1916 Female, age 42, unknown 428.4
2583 Male, age 75, right hemisphere 410.8
2409 Female, age 72, unknown 366.3
1941 Male, age 53, unknown 355.2
1889 Female, age 72, unknown 347.6
2241 Male, age 72, unknown 334.2
Superior colliculus
nTPM: 396.0
1995 Male, age 72, unknown 495.2
2664 Male, age 75, both hemispheres 464.1
1913 Female, age 42, unknown 458.2
2587 Male, age 74, left hemisphere 423.4
1796 Male, age 53, unknown 415.2
2668 Female, age 75, unknown 402.2
1839 Male, age 51, unknown 362.6
2261 Male, age 18, unknown 339.5
2087 Female, age 72, unknown 311.2
1895 Male, age 76, right hemisphere 288.0
Ventral tegmental area
nTPM: 414.5
1915 Female, age 42, unknown 454.5
2223 Female, age 72, unknown 452.1
2021 Male, age 53, unknown 427.9
2410 Female, age 72, unknown 402.5
2218 Male, age 76, both hemispheres 385.9
1942 Male, age 51, unknown 364.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 673.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 673.2
Samples: 183

Max nTPM: 1686.8
Min nTPM: 252.9
Std nTPM: 247.6
Median nTPM: 637.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1686.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1610.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1339.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1303.0
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1232.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1228.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1223.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1219.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1202.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1190.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1102.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 339.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 339.8
Samples: 4

Max nTPM: 379.7
Min nTPM: 305.3
Sample A Male 379.7
Sample B Male 328.2
Sample C Female 305.3
Sample D Female 346.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
100146146 Antisense, RP_110623_01_A03, Mouse strain C57BL/6J (56 days, male) 17.8

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