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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS11
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN40 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM8 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE13 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL SPINAL CORD ENTORHINAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1733.1 nTPM
HPA Brain:628.8 nTPM
GTEx:1733.1 nTPM
FANTOM5:215.7 Scaled Tags Per Million
Mouse:331.9 nTPM
Pig:251.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049719
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 132835
Sample Intensity
Hippocampal formation_01
121191
Hippocampal formation_02
153348
Hippocampal formation_03
41640
Hippocampal formation_04
137622
Hippocampal formation_05
128049
Hippocampal formation_06
164396

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

628.8
Sample id Sample description nTPM
Dentate gyrus
nTPM: 617.5
2530 Female, age 94, left hemisphere 814.5
2010 Male, age 76, both hemispheres 686.5
2531 Female, age 67, both hemispheres 612.8
2246 Female, age 85, both hemispheres 587.9
1927 Female, age 91, both hemispheres 515.4
2528 Male, age 74, both hemispheres 488.1
Entorhinal gyrus
nTPM: 611.6
2686 Male, age 75, right hemisphere 749.8
2117 Female, age 91, right hemisphere 639.5
1787 Male, age 76, left hemisphere 627.4
1938 Female, age 85, left hemisphere 583.6
2764 Male, age 80, right hemisphere 576.8
2613 Female, age 94, left hemisphere 492.5
Hippocampus, CA1
nTPM: 578.6
2082 Female, age 91, right hemisphere 608.2
2749 Male, age 80, left hemisphere 582.0
2527 Male, age 74, both hemispheres 579.1
2045 Male, age 76, both hemispheres 573.8
1873 Female, age 85, both hemispheres 549.8
Hippocampus, CA2
nTPM: 597.6
1963 Male, age 80, left hemisphere 677.4
2437 Female, age 94, left hemisphere 635.8
1940 Female, age 85, left hemisphere 590.8
2113 Female, age 91, right hemisphere 577.2
1892 Male, age 76, both hemispheres 564.8
2249 Male, age 74, both hemispheres 539.8
Hippocampus, CA3
nTPM: 562.2
1867 Male, age 76, both hemispheres 643.2
1891 Female, age 85, both hemispheres 616.6
2861 Female, age 67, both hemispheres 614.5
2137 Male, age 80, left hemisphere 540.6
2436 Male, age 74, both hemispheres 528.7
2620 Female, age 94, left hemisphere 429.6
Parahippocampal cortex
nTPM: 574.2
2018 Male, age 76, both hemispheres 803.3
2532 Female, age 72, left hemisphere 610.3
2250 Female, age 67, right hemisphere 603.7
2245 Female, age 91, both hemispheres 590.7
2692 Male, age 74, both hemispheres 565.1
1850 Male, age 80, both hemispheres 555.1
1990 Female, age 91, right hemisphere 550.2
1933 Female, age 85, both hemispheres 540.5
2622 Female, age 67, right hemisphere 495.8
2693 Female, age 94, both hemispheres 427.5
Perirhinal gyrus
nTPM: 586.6
1841 Female, age 85, right hemisphere 623.3
1847 Female, age 91, left hemisphere 619.8
1794 Male, age 80, right hemisphere 608.2
2848 Male, age 76, right hemisphere 551.2
2521 Female, age 94, right hemisphere 530.3
Subiculum
nTPM: 628.8
2042 Male, age 76, both hemispheres 721.3
2438 Female, age 94, left hemisphere 704.9
1977 Female, age 85, both hemispheres 635.5
1901 Male, age 80, both hemispheres 607.4
2619 Male, age 74, both hemispheres 573.2
2729 Female, age 91, right hemisphere 530.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1733.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1733.1
Samples: 255

Max nTPM: 4098.5
Min nTPM: 660.1
Std nTPM: 585.7
Median nTPM: 1622.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 4098.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 4063.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3812.3
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 3511.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 3429.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3392.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 3218.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 3186.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 3037.4
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 2977.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 2919.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2894.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2869.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2867.8
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 2816.9
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 2697.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2686.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 2678.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 2676.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 2652.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 2593.5
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 2583.1
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 2555.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 2549.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 2545.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2539.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2482.9
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 2463.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 2462.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 2457.5
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 2425.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 2407.3
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 2404.6
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 2392.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 2380.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2374.3
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 2336.5
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 2332.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 2327.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2324.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2308.5
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 2263.8
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 2248.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 2234.0
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 2222.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 2213.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 2213.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 2209.6
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 2205.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 2198.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 2164.4
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 2139.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 2138.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 2125.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 2121.4
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 2115.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 2099.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 2098.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 2082.0
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 2056.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2034.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 2019.1
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 2019.0
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 2013.8
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 2008.1
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 1998.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1990.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 1986.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 1980.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1969.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1963.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1956.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1949.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1941.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1934.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1921.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1888.1
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 1878.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1872.8
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1872.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 1866.5
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1855.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1842.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 1834.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 1828.3
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 1823.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1819.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 1814.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1806.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1799.7
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1794.1
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 1793.6
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1791.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1791.3
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 1785.5
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1776.8
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 1772.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1770.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1770.7
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 1763.2
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 1759.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1756.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 1746.5
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 1745.0
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 1737.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 1731.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 1715.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 1714.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1706.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1693.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 1679.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 1673.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1673.4
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 1669.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 1669.1
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1663.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 1658.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1656.5
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1654.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 1645.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1642.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1638.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1638.2
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 1637.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 1637.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 1627.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1626.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 1622.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1622.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 1607.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1605.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1598.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1586.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 1581.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1578.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1575.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 1570.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 1570.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1561.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 1561.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 1554.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1540.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1539.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1528.3
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 1525.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 1523.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 1523.4
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 1521.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 1512.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 1512.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1506.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 1500.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 1484.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 1477.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 1475.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 1468.6
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1465.4
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 1455.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 1450.4
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 1433.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1431.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1430.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1429.3
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1422.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1422.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 1420.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1410.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 1407.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 1405.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 1400.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 1396.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 1394.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 1390.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1389.2
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 1387.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 1383.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1377.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1377.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1371.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 1361.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 1356.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1354.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1353.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1348.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 1346.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1342.0
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 1335.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 1332.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 1332.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 1324.6
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 1320.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1319.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 1318.6
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 1315.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 1312.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 1310.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 1305.0
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 1304.6
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 1303.6
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 1298.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 1291.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1286.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1272.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 1265.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1257.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1257.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 1256.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 1254.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 1246.1
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1245.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 1245.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 1244.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 1243.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 1239.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 1232.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 1228.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1219.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1210.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1209.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 1207.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 1194.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 1184.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1182.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1182.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1165.2
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 1159.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1152.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1131.0
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 1128.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 1128.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1127.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 1127.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1123.8
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 1121.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1110.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 1053.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 1051.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1051.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1026.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1021.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1019.8
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 996.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 995.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 991.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 984.2
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 980.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 969.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 947.3
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 942.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 937.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 919.2
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 890.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 818.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 792.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 660.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 215.7
FF:10169-103B7 60 years, female 274.1
FF:10153-102I9 76 years, female 157.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.0
Pig sample Sample description nTPM
Subiculum
nTPM: 207.5
Samples: 4

Max nTPM: 290.7
Min nTPM: 165.8
Sample A Female 290.7
Sample B Female 186.3
Sample C Male 165.8
Sample D Male 187.4
Dorsal hippocampus
nTPM: 251.0
Samples: 4

Max nTPM: 339.3
Min nTPM: 172.7
Sample A Female 339.3
Sample B Female 210.1
Sample C Male 281.8
Sample D Male 172.7
Entorhinal cortex
nTPM: 198.1
Samples: 4

Max nTPM: 223.0
Min nTPM: 148.5
Sample A Female 199.3
Sample B Female 223.0
Sample C Male 221.6
Sample D Male 148.5
Ventral hippocampus
nTPM: 218.8
Samples: 4

Max nTPM: 265.8
Min nTPM: 171.8
Sample A Female 206.1
Sample B Female 171.8
Sample C Male 265.8
Sample D Male 231.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 331.9
Samples: 4

Max nTPM: 339.0
Min nTPM: 318.2
Sample A 335.4
Sample B 334.9
Sample C 339.0
Sample D 318.2
Hippocampal formation
nTPM: 322.3
Samples: 4

Max nTPM: 396.8
Min nTPM: 230.4
Sample A 372.4
Sample B 289.7
Sample C 230.4
Sample D 396.8

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