BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2077.2 nTPM
HPA Brain:749.9 nTPM
GTEx:2077.2 nTPM
FANTOM5:219.8 Scaled Tags Per Million
Mouse:418.3 nTPM
Pig:318.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 749.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 662.2
2666 Male, age 74, left hemisphere 759.2
1870 Female, age 42, unknown 737.0
2828 Female, age 72, unknown 721.1
2586 Male, age 75, left hemisphere 677.1
1833 Male, age 53, unknown 664.8
1830 Male, age 51, unknown 637.5
1827 Male, age 72, unknown 627.3
2411 Female, age 72, unknown 610.3
2219 Male, age 76, both hemispheres 601.3
2019 Male, age 18, unknown 586.0
Dorsal raphe nucleus
nTPM: 675.7
2016 Female, age 72, unknown 746.1
2298 Female, age 72, unknown 719.7
1828 Male, age 53, unknown 682.0
2750 Male, age 76, both hemispheres 664.7
2047 Male, age 72, unknown 566.1
Inferior colliculus
nTPM: 667.0
2849 Male, age 72, unknown 713.7
1890 Male, age 53, unknown 685.9
2097 Female, age 72, unknown 651.1
1848 Female, age 42, unknown 617.2
Median raphe nucleus
nTPM: 641.4
2220 Male, age 76, midline 641.4
Periaquaductal grey, anterior
nTPM: 666.1
2502 Female, age 75, unknown 761.3
1795 Male, age 51, unknown 624.9
1947 Male, age 18, unknown 612.1
Periaquaductal grey, dorsal
nTPM: 678.3
2850 Male, age 76, both hemispheres 739.0
1840 Male, age 53, unknown 708.4
1831 Male, age 72, unknown 679.1
2464 Female, age 72, unknown 586.8
Periaquaductal grey, lateral
nTPM: 657.5
2140 Male, age 76, both hemispheres 698.6
2053 Male, age 18, unknown 671.2
2272 Male, age 74, both hemispheres 602.6
Pretectal area
nTPM: 639.5
2316 Male, age 76, right hemisphere 710.4
2825 Male, age 18, unknown 683.5
2224 Female, age 72, unknown 661.5
1817 Female, age 42, unknown 655.1
1815 Male, age 53, unknown 648.8
2007 Male, age 72, unknown 644.0
2667 Female, age 75, unknown 623.0
2407 Male, age 75, both hemispheres 616.7
2273 Male, age 74, both hemispheres 605.1
1944 Female, age 72, unknown 602.7
1816 Male, age 51, unknown 583.6
Red nucleus
nTPM: 703.6
2503 Female, age 72, unknown 846.5
1865 Male, age 51, unknown 779.3
1821 Female, age 72, unknown 755.2
1904 Male, age 53, unknown 754.5
2227 Male, age 72, unknown 730.3
2769 Male, age 72, unknown 722.5
2584 Male, age 75, left hemisphere 658.6
2785 Male, age 18, unknown 656.1
2725 Female, age 75, unknown 655.4
1954 Female, age 42, unknown 635.9
2588 Male, age 74, left hemisphere 635.0
2823 Male, age 76, right hemisphere 613.7
Substantia nigra
nTPM: 749.9
2699 Male, age 18, unknown 1014.1
1851 Male, age 51, unknown 906.7
2665 Male, age 74, both hemispheres 878.7
1916 Female, age 42, unknown 803.0
2409 Female, age 72, unknown 764.3
1889 Female, age 72, unknown 692.4
2241 Male, age 72, unknown 668.1
2590 Female, age 75, unknown 640.6
1941 Male, age 53, unknown 595.7
2583 Male, age 75, right hemisphere 535.0
Superior colliculus
nTPM: 706.1
2587 Male, age 74, left hemisphere 848.9
1913 Female, age 42, unknown 828.4
1995 Male, age 72, unknown 824.3
2668 Female, age 75, unknown 766.3
1796 Male, age 53, unknown 689.5
2664 Male, age 75, both hemispheres 680.3
1839 Male, age 51, unknown 656.4
2261 Male, age 18, unknown 603.3
2087 Female, age 72, unknown 591.1
1895 Male, age 76, right hemisphere 572.6
Ventral tegmental area
nTPM: 734.5
1915 Female, age 42, unknown 843.8
2223 Female, age 72, unknown 788.6
2021 Male, age 53, unknown 759.2
1942 Male, age 51, unknown 682.8
2410 Female, age 72, unknown 678.3
2218 Male, age 76, both hemispheres 654.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2077.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2077.2
Samples: 183

Max nTPM: 5008.7
Min nTPM: 709.7
Std nTPM: 725.2
Median nTPM: 1960.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5008.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4950.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4776.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 3955.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3781.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 3617.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 3610.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 3515.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3471.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3337.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 3295.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 219.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.8
FF:10158-103A5 76 years, female 219.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 318.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 318.9
Samples: 3

Max nTPM: 383.5
Min nTPM: 251.7
Sample A Female 383.5
Sample B Female 321.4
Sample C Male 251.7
Midbrain
nTPM: 228.2
Samples: 3

Max nTPM: 295.9
Min nTPM: 182.2
Sample B Female 295.9
Sample C Male 206.6
Sample D Male 182.2
Periaqueductal gray
nTPM: 245.4
Samples: 3

Max nTPM: 269.8
Min nTPM: 226.7
Sample B Female 226.7
Sample C Male 269.8
Sample D Male 239.8
Superior colliculi
nTPM: 308.4
Samples: 4

Max nTPM: 367.3
Min nTPM: 248.6
Sample A Female 367.3
Sample B Female 348.5
Sample C Male 248.6
Sample D Male 269.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 418.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 418.3
Samples: 4

Max nTPM: 446.2
Min nTPM: 389.6
Sample A 446.2
Sample B 389.6
Sample C 405.1
Sample D 432.1

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