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BETA
  • SUMMARY

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  • EVOLUTION

  • RPS11
EVOLUTIONARY RETINA Show tissue menu
BRAIN40 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM8 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE13 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL SPINAL CORD ENTORHINAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:932.7 nTPM
GTEx:932.7 nTPM
FANTOM5:252.6 Scaled Tags Per Million
Mouse:336.1 nTPM
Pig:133.4 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

932.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 932.7
Samples: 105

Max nTPM: 1425.0
Min nTPM: 390.3
Std nTPM: 204.1
Median nTPM:
218_1 71 years, female 1425.0
321_1 62 years, female 1293.9
447_1 81 years, male 1262.3
379_1 60 years, male 1246.2
377_1 82 years, female 1222.3
386_1 76 years, male 1221.2
347_1 72 years, male 1218.6
237_1 82 years, male 1212.7
452_1 88 years, female 1210.4
389_1 86 years, female 1188.4
375_1 74 years, female 1174.9
394_1 75 years, female 1172.7
319_1 81 years, male 1156.0
384_1 83 years, male 1152.3
246_1 77 years, male 1149.6
322_1 76 years, male 1148.4
173_1 67 years, male 1138.3
41_1 94 years, female 1113.7
177_1 74 years, male 1113.2
376_1 75 years, female 1109.7
354_1 81 years, female 1101.7
189_1 76 years, male 1098.0
243_1 75 years, male 1094.8
349_1 83 years, male 1078.6
6_1 73 years, female 1075.9
172_1 72 years, female 1065.9
153_1 70 years, female 1065.8
355_1 70 years, female 1063.9
396_1 62 years, male 1063.7
351_1 91 years, male 1059.2
120_1 70 years, female 1057.8
163_1 78 years, male 1057.3
4_1 88 years, female 1056.9
317_1 60 years, male 1054.6
352_1 62 years, male 1053.7
17_1 71 years, male 1043.6
145_1 84 years, male 1033.8
320_1 89 years, female 1025.1
404_1 82 years, female 1022.1
35_1 74 years, female 1017.4
295_1 61 years, female 1014.7
353_1 82 years, female 1007.0
2_1 77 years, female 1002.4
316_1 62 years, male 992.5
335_1 73 years, female 986.2
217_1 76 years, male 983.0
229_1 69 years, female 982.1
406_1 79 years, male 974.1
405_1 91 years, male 965.8
99_1 64 years, male 958.1
503_1 68 years, male 953.0
137_1 83 years, male 950.5
265_1 87 years, male 948.4
350_1 84 years, female 944.7
356_1 87 years, female 940.1
425_1 59 years, female 938.6
526_1 61 years, male 938.3
251_1 78 years, male 924.4
307_1 66 years, female 923.3
266_1 85 years, male 913.1
308_1 70 years, female 905.5
264_1 73 years, female 902.5
292_1 71 years, male 900.3
254_1 77 years, female 895.6
318_1 68 years, male 891.7
126_1 63 years, male 891.2
291_1 76 years, male 884.3
286_1 68 years, female 872.5
315_1 62 years, female 865.8
313_1 79 years, female 863.6
293_1 68 years, female 858.9
18_1 88 years, male 855.4
506_1 65 years, male 846.3
311_1 78 years, male 841.0
480_1 63 years, male 840.6
518_1 75 years, female 839.9
468_1 89 years, male 830.2
324_1 76 years, male 814.4
314_1 67 years, male 812.0
115_1 83 years, male 808.0
109_1 81 years, female 798.5
499_1 55 years, female 795.0
348_1 84 years, male 787.3
517_1 88 years, male 786.5
119_1 70 years, female 780.6
162_1 79 years, female 777.4
288_1 66 years, female 773.7
42_1 85 years, male 759.4
117_1 61 years, male 744.7
139_1 64 years, female 742.8
414_1 84 years, female 727.5
142_1 61 years, female 719.0
495_1 57 years, female 697.6
415_1 77 years, female 686.8
9_1 66 years, female 676.8
81_1 67 years, male 660.6
89_1 63 years, male 595.4
32_1 67 years, male 588.5
501_1 88 years, male 585.5
466_1 57 years, female 536.6
43_1 64 years, female 456.8
413_1 59 years, female 442.4
490_1 67 years, female 440.8
491_1 89 years, female 401.2
149_1 88 years, male 390.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

252.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 252.6
FF:10030-101E3 24-65 years, mixed 252.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
Pig sample Sample description nTPM
Retina
nTPM: 133.4
Samples: 4

Max nTPM: 167.4
Min nTPM: 115.0
Sample A Female 124.0
Sample B Female 127.2
Sample C Male 167.4
Sample D Male 115.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

336.1
Mouse sample Sample description nTPM
Retina
nTPM: 336.1
Samples: 3

Max nTPM: 377.5
Min nTPM: 257.0
Sample D 377.5
Sample B 257.0
Sample C 373.9

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