A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8539.5
nTPM
Monaco:
2385.3
nTPM
Schmiedel:
1431.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8539.5
HPA sample
nTPM
Memory B-cell nTPM: 8539.5
Samples: 6
Max nTPM: 12198.9
Min nTPM: 6433.5
P10809_1017
6433.5
P10809_1025
7932.5
P10809_1044
12198.9
P10809_1063
8492.2
P10809_1092
7850.3
P10809_1105
8329.4
Naive B-cell nTPM: 8023.4
Samples: 6
Max nTPM: 12582.2
Min nTPM: 6112.7
P10809_1011
6112.7
P10809_1029
7269.0
P10809_1048
12582.2
P10809_1067
7461.2
P10809_1091
6985.4
P10809_1104
7730.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2385.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2233.4
Samples: 4
Max nTPM: 3421.9
Min nTPM: 1259.6
RHH5310_R3677
2701.6
RHH5218_R3590
1259.6
RHH5247_R3619
3421.9
RHH5276_R3648
1550.3
Naive B-cell nTPM: 1916.7
Samples: 4
Max nTPM: 2459.4
Min nTPM: 1554.1
RHH5308_R3675
2459.4
RHH5216_R3588
1630.1
RHH5245_R3617
2023.1
RHH5274_R3646
1554.1
Non-switched memory B-cell nTPM: 2177.1
Samples: 4
Max nTPM: 2923.1
Min nTPM: 1589.2
RHH5309_R3676
2923.1
RHH5217_R3589
1798.4
RHH5246_R3618
2397.6
RHH5275_R3647
1589.2
Plasmablast nTPM: 1608.8
Samples: 4
Max nTPM: 1932.6
Min nTPM: 1212.0
RHH5312_R3679
1803.1
RHH5220_R3592
1487.4
RHH5249_R3621
1932.6
RHH5278_R3650
1212.0
Switched memory B-cell nTPM: 2385.3
Samples: 4
Max nTPM: 3764.9
Min nTPM: 1550.7
RHH5311_R3678
3764.9
RHH5219_R3591
2295.6
RHH5248_R3620
1929.9
RHH5277_R3649
1550.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1431.7
Schmiedel sample id
TPM
Naive B-cell TPM: 1431.7
Samples: 91
Max TPM: 2415.9
Min TPM: 727.4
B_CELL_NAIVE_1
2415.9
B_CELL_NAIVE_2
1918.2
B_CELL_NAIVE_3
1865.6
B_CELL_NAIVE_4
1830.0
B_CELL_NAIVE_5
1813.3
B_CELL_NAIVE_6
1807.8
B_CELL_NAIVE_7
1792.2
B_CELL_NAIVE_8
1791.7
B_CELL_NAIVE_9
1764.1
B_CELL_NAIVE_10
1748.3
B_CELL_NAIVE_11
1747.7
B_CELL_NAIVE_12
1737.9
B_CELL_NAIVE_13
1736.3
B_CELL_NAIVE_14
1729.7
B_CELL_NAIVE_15
1713.8
B_CELL_NAIVE_16
1712.0
B_CELL_NAIVE_17
1710.6
B_CELL_NAIVE_18
1704.8
B_CELL_NAIVE_19
1702.9
B_CELL_NAIVE_20
1697.6
B_CELL_NAIVE_21
1673.5
B_CELL_NAIVE_22
1661.1
B_CELL_NAIVE_23
1653.5
B_CELL_NAIVE_24
1644.7
B_CELL_NAIVE_25
1642.1
B_CELL_NAIVE_26
1634.6
B_CELL_NAIVE_27
1619.1
B_CELL_NAIVE_28
1617.6
B_CELL_NAIVE_29
1613.3
B_CELL_NAIVE_30
1605.8
B_CELL_NAIVE_31
1605.4
B_CELL_NAIVE_32
1593.9
B_CELL_NAIVE_33
1549.8
B_CELL_NAIVE_34
1546.1
B_CELL_NAIVE_35
1534.4
B_CELL_NAIVE_36
1519.6
B_CELL_NAIVE_37
1519.0
B_CELL_NAIVE_38
1511.0
B_CELL_NAIVE_39
1507.2
B_CELL_NAIVE_40
1498.7
B_CELL_NAIVE_41
1497.9
B_CELL_NAIVE_42
1494.9
B_CELL_NAIVE_43
1493.8
B_CELL_NAIVE_44
1458.6
B_CELL_NAIVE_45
1448.0
B_CELL_NAIVE_46
1440.8
B_CELL_NAIVE_47
1439.6
B_CELL_NAIVE_48
1434.5
B_CELL_NAIVE_49
1425.6
B_CELL_NAIVE_50
1419.2
B_CELL_NAIVE_51
1408.2
B_CELL_NAIVE_52
1401.3
B_CELL_NAIVE_53
1401.3
B_CELL_NAIVE_54
1394.8
B_CELL_NAIVE_55
1393.6
B_CELL_NAIVE_56
1386.6
B_CELL_NAIVE_57
1384.6
B_CELL_NAIVE_58
1365.4
B_CELL_NAIVE_59
1358.1
B_CELL_NAIVE_60
1355.1
B_CELL_NAIVE_61
1327.5
B_CELL_NAIVE_62
1325.4
B_CELL_NAIVE_63
1298.7
B_CELL_NAIVE_64
1294.8
B_CELL_NAIVE_65
1287.1
B_CELL_NAIVE_66
1282.5
B_CELL_NAIVE_67
1253.0
B_CELL_NAIVE_68
1227.6
B_CELL_NAIVE_69
1210.5
B_CELL_NAIVE_70
1208.7
B_CELL_NAIVE_71
1204.6
B_CELL_NAIVE_72
1199.5
B_CELL_NAIVE_73
1198.7
B_CELL_NAIVE_74
1197.7
B_CELL_NAIVE_75
1140.3
B_CELL_NAIVE_76
1111.1
B_CELL_NAIVE_77
1109.9
B_CELL_NAIVE_78
1089.4
B_CELL_NAIVE_79
1075.3
B_CELL_NAIVE_80
1069.9
B_CELL_NAIVE_81
1040.8
B_CELL_NAIVE_82
1035.4
B_CELL_NAIVE_83
991.1
B_CELL_NAIVE_84
977.5
B_CELL_NAIVE_85
928.6
B_CELL_NAIVE_86
912.5
B_CELL_NAIVE_87
889.0
B_CELL_NAIVE_88
884.8
B_CELL_NAIVE_89
847.6
B_CELL_NAIVE_90
844.9
B_CELL_NAIVE_91
727.4
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