A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13507.3
nTPM
Monaco:
1806.8
nTPM
TOTAL PBMC - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13507.3
HPA sample
nTPM
Total PBMC nTPM: 13507.3
Samples: 6
Max nTPM: 21625.5
Min nTPM: 5033.1
P10809_1008
21625.5
P10809_1036
10993.1
P10809_1055
17652.6
P10809_1074
12385.1
P10809_1076
13354.4
P10809_1095
5033.1
TOTAL PBMC - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1806.8
Monaco sample
nTPM
Total PBMC nTPM: 1806.8
Samples: 13
Max nTPM: 2246.8
Min nTPM: 1207.3
RHH5321_R3688
1975.7
RHH5322_R3689
1943.9
RHH5323_R3690
2172.0
RHH5324_R3691
1981.8
RHH5325_R3692
1718.5
RHH5326_R3693
2246.8
RHH5328_R3702
1771.5
RHH5290_R3694
2134.8
RHH5291_R3695
1207.3
RHH5292_R3696
1508.2
RHH5293_R3697
1214.5
RHH5294_R3698
1462.8
RHH5295_R3699
2150.4
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
