A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4709.4
nTPM
Monaco:
677.3
nTPM
Schmiedel:
953.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4709.4
HPA sample
nTPM
NK-cell nTPM: 4709.4
Samples: 6
Max nTPM: 5638.6
Min nTPM: 3566.8
P10809_1013
3747.7
P10809_1033
5269.9
P10809_1052
4726.1
P10809_1071
5638.6
P10809_1093
3566.8
P10809_1103
5307.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
677.3
Monaco sample
nTPM
NK-cell nTPM: 677.3
Samples: 4
Max nTPM: 898.0
Min nTPM: 472.0
RHH5316_R3683
898.0
RHH5224_R3596
623.2
RHH5253_R3625
472.0
RHH5282_R3654
715.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
953.0
Schmiedel sample id
TPM
NK-cell TPM: 953.0
Samples: 90
Max TPM: 1596.2
Min TPM: 575.6
NK_1
1596.2
NK_2
1312.2
NK_3
1307.0
NK_4
1286.6
NK_5
1280.3
NK_6
1260.8
NK_7
1255.9
NK_8
1243.9
NK_9
1243.1
NK_10
1228.7
NK_11
1223.9
NK_12
1206.3
NK_13
1187.4
NK_14
1186.0
NK_15
1179.9
NK_16
1175.6
NK_17
1168.4
NK_18
1164.7
NK_19
1161.5
NK_20
1122.8
NK_21
1120.4
NK_22
1119.2
NK_23
1118.8
NK_24
1094.7
NK_25
1066.3
NK_26
1060.5
NK_27
1052.6
NK_28
1050.0
NK_29
1045.6
NK_30
1030.2
NK_31
1014.4
NK_32
1013.3
NK_33
1011.4
NK_34
1003.3
NK_35
1003.0
NK_36
999.0
NK_37
995.8
NK_38
991.9
NK_39
985.6
NK_40
961.7
NK_41
940.8
NK_42
934.4
NK_43
922.9
NK_44
913.5
NK_45
910.7
NK_46
910.3
NK_47
908.2
NK_48
907.9
NK_49
899.2
NK_50
898.8
NK_51
897.1
NK_52
896.1
NK_53
894.4
NK_54
893.3
NK_55
884.1
NK_56
882.9
NK_57
882.9
NK_58
878.6
NK_59
869.0
NK_60
864.5
NK_61
855.5
NK_62
850.4
NK_63
847.6
NK_64
842.6
NK_65
827.4
NK_66
820.9
NK_67
792.9
NK_68
785.1
NK_69
778.5
NK_70
778.1
NK_71
773.6
NK_72
768.3
NK_73
766.3
NK_74
753.2
NK_75
751.7
NK_76
743.3
NK_77
738.2
NK_78
726.7
NK_79
720.0
NK_80
710.3
NK_81
706.0
NK_82
699.1
NK_83
695.9
NK_84
692.0
NK_85
675.7
NK_86
667.3
NK_87
654.4
NK_88
635.5
NK_89
621.1
NK_90
575.6
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