A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2622.0
nTPM
Monaco:
905.1
nTPM
Schmiedel:
729.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2622.0
HPA sample
nTPM
Classical monocyte nTPM: 2622.0
Samples: 6
Max nTPM: 5124.3
Min nTPM: 1648.4
P10809_1003
5124.3
P10809_1020
2001.4
P10809_1039
2414.3
P10809_1058
1982.5
P10809_1080
1648.4
P10809_1107
2561.1
Intermediate monocyte nTPM: 2171.4
Samples: 6
Max nTPM: 3215.8
Min nTPM: 1488.8
P10809_1004
1976.2
P10809_1023
2504.2
P10809_1042
2194.4
P10809_1061
1488.8
P10809_1081
1649.0
P10809_1108
3215.8
Non-classical monocyte nTPM: 1923.9
Samples: 5
Max nTPM: 2601.3
Min nTPM: 1523.1
P10809_1005
2148.0
P10809_1053
1809.6
P10809_1072
1523.1
P10809_1082
1537.4
P10809_1109
2601.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
905.1
Monaco sample
nTPM
Classical monocyte nTPM: 790.0
Samples: 4
Max nTPM: 1016.6
Min nTPM: 522.4
RHH5313_R3680
727.1
RHH5221_R3593
522.4
RHH5250_R3622
1016.6
RHH5279_R3651
893.7
Intermediate monocyte nTPM: 905.1
Samples: 4
Max nTPM: 1125.9
Min nTPM: 697.9
RHH5314_R3681
1125.9
RHH5222_R3594
697.9
RHH5251_R3623
831.0
RHH5280_R3652
965.7
Non-classical monocyte nTPM: 660.3
Samples: 4
Max nTPM: 785.6
Min nTPM: 467.2
RHH5315_R3682
785.6
RHH5223_R3595
467.2
RHH5252_R3624
646.1
RHH5281_R3653
742.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
729.9
Schmiedel sample id
TPM
Classical monocyte TPM: 729.9
Samples: 91
Max TPM: 980.3
Min TPM: 481.4
MONOCYTES_1
980.3
MONOCYTES_2
960.3
MONOCYTES_3
954.3
MONOCYTES_4
928.2
MONOCYTES_5
912.6
MONOCYTES_6
907.2
MONOCYTES_7
897.1
MONOCYTES_8
875.1
MONOCYTES_9
865.5
MONOCYTES_10
862.6
MONOCYTES_11
861.6
MONOCYTES_12
861.2
MONOCYTES_13
855.2
MONOCYTES_14
848.7
MONOCYTES_15
847.8
MONOCYTES_16
846.0
MONOCYTES_17
840.6
MONOCYTES_18
828.4
MONOCYTES_19
827.8
MONOCYTES_20
825.7
MONOCYTES_21
822.9
MONOCYTES_22
819.2
MONOCYTES_23
814.6
MONOCYTES_24
811.2
MONOCYTES_25
808.3
MONOCYTES_26
805.2
MONOCYTES_27
803.7
MONOCYTES_28
803.3
MONOCYTES_29
801.8
MONOCYTES_30
796.5
MONOCYTES_31
773.9
MONOCYTES_32
762.3
MONOCYTES_33
761.3
MONOCYTES_34
759.9
MONOCYTES_35
759.5
MONOCYTES_36
755.2
MONOCYTES_37
752.0
MONOCYTES_38
749.6
MONOCYTES_39
746.1
MONOCYTES_40
745.7
MONOCYTES_41
743.8
MONOCYTES_42
742.6
MONOCYTES_43
741.6
MONOCYTES_44
740.0
MONOCYTES_45
740.0
MONOCYTES_46
739.4
MONOCYTES_47
739.4
MONOCYTES_48
736.6
MONOCYTES_49
734.6
MONOCYTES_50
732.2
MONOCYTES_51
731.3
MONOCYTES_52
730.2
MONOCYTES_53
719.1
MONOCYTES_54
718.5
MONOCYTES_55
715.0
MONOCYTES_56
711.0
MONOCYTES_57
711.0
MONOCYTES_58
703.0
MONOCYTES_59
702.6
MONOCYTES_60
688.7
MONOCYTES_61
682.7
MONOCYTES_62
680.1
MONOCYTES_63
678.1
MONOCYTES_64
674.4
MONOCYTES_65
673.2
MONOCYTES_66
672.0
MONOCYTES_67
665.8
MONOCYTES_68
662.1
MONOCYTES_69
659.1
MONOCYTES_70
647.3
MONOCYTES_71
645.4
MONOCYTES_72
633.2
MONOCYTES_73
629.1
MONOCYTES_74
619.6
MONOCYTES_75
608.5
MONOCYTES_76
601.5
MONOCYTES_77
597.8
MONOCYTES_78
593.7
MONOCYTES_79
591.0
MONOCYTES_80
583.7
MONOCYTES_81
578.3
MONOCYTES_82
566.5
MONOCYTES_83
547.3
MONOCYTES_84
546.7
MONOCYTES_85
540.9
MONOCYTES_86
540.4
MONOCYTES_87
538.2
MONOCYTES_88
525.4
MONOCYTES_89
511.2
MONOCYTES_90
487.5
MONOCYTES_91
481.4
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Non-classical monocyte TPM: 618.0
Samples: 90
Max TPM: 1049.2
Min TPM: 324.9
M2_1
1049.2
M2_2
913.0
M2_3
869.3
M2_4
800.5
M2_5
775.7
M2_6
751.3
M2_7
747.5
M2_8
747.0
M2_9
740.4
M2_10
739.4
M2_11
735.9
M2_12
734.8
M2_13
734.1
M2_14
732.0
M2_15
730.3
M2_16
727.1
M2_17
724.9
M2_18
724.8
M2_19
719.4
M2_20
712.8
M2_21
712.3
M2_22
707.3
M2_23
706.9
M2_24
706.6
M2_25
702.6
M2_26
681.6
M2_27
678.6
M2_28
676.5
M2_29
669.7
M2_30
657.8
M2_31
656.9
M2_32
653.1
M2_33
652.8
M2_34
652.6
M2_35
652.3
M2_36
648.8
M2_37
648.6
M2_38
646.7
M2_39
645.9
M2_40
645.8
M2_41
645.2
M2_42
644.9
M2_43
634.3
M2_44
633.2
M2_45
627.8
M2_46
627.6
M2_47
626.9
M2_48
614.7
M2_49
613.8
M2_50
611.3
M2_51
610.5
M2_52
608.9
M2_53
607.8
M2_54
606.4
M2_55
598.4
M2_56
587.5
M2_57
580.4
M2_58
574.0
M2_59
570.5
M2_60
558.8
M2_61
550.6
M2_62
550.3
M2_63
549.0
M2_64
546.6
M2_65
545.0
M2_66
542.1
M2_67
540.0
M2_68
539.7
M2_69
536.8
M2_70
531.5
M2_71
529.6
M2_72
516.6
M2_73
505.5
M2_74
500.8
M2_75
493.1
M2_76
489.9
M2_77
486.8
M2_78
480.3
M2_79
479.1
M2_80
477.2
M2_81
472.6
M2_82
455.6
M2_83
444.9
M2_84
443.7
M2_85
433.1
M2_86
432.5
M2_87
420.8
M2_88
414.8
M2_89
387.8
M2_90
324.9
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