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  • RPL32
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1604.8 nTPM
HPA Brain:488.0 nTPM
GTEx:1604.8 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:183.7 nTPM
Mouse:846.7 nTPM
Allen mouse:5.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.0
Sample id Sample description nTPM
Amygdala
nTPM: 488.0
2695 Female, age 67, right hemisphere 630.5
2814 Male, age 76, right hemisphere 484.1
2514 Male, age 75, right hemisphere 457.2
2517 Female, age 94, left hemisphere 446.0
1987 Female, age 91, left hemisphere 422.2
Basal amygdala
nTPM: 405.2
2827 Female, age 67, right hemisphere 508.2
2685 Female, age 94, left hemisphere 421.8
2609 Male, age 75, right hemisphere 410.0
2110 Male, age 80, left hemisphere 402.8
1955 Male, age 76, both hemispheres 346.8
2243 Female, age 91, right hemisphere 341.6
Central amygdala
nTPM: 440.0
2826 Female, age 94, left hemisphere 667.6
2515 Male, age 75, right hemisphere 436.7
1905 Male, age 76, both hemispheres 377.5
2701 Female, age 91, right hemisphere 360.2
2239 Male, age 80, left hemisphere 358.0
Corticomedial amygdala
nTPM: 378.7
2429 Female, age 94, left hemisphere 406.4
2428 Male, age 75, right hemisphere 404.2
2829 Male, age 80, left hemisphere 388.3
2535 Female, age 67, right hemisphere 386.3
2240 Male, age 76, both hemispheres 372.5
2242 Female, age 91, right hemisphere 314.4
Lateral amygdala
nTPM: 459.3
2830 Female, age 67, right hemisphere 654.4
2516 Male, age 75, right hemisphere 557.6
2534 Female, age 94, left hemisphere 481.4
2256 Male, age 80, left hemisphere 399.6
1883 Male, age 76, both hemispheres 331.6
2255 Female, age 91, right hemisphere 331.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1604.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1604.8
Samples: 181

Max nTPM: 5346.0
Min nTPM: 713.7
Std nTPM: 642.5
Median nTPM: 1472.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5346.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4696.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3949.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3814.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3540.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 3161.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3117.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3010.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2903.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2836.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2755.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2417.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2331.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2304.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2256.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2210.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2205.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2205.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2170.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2168.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 2130.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2120.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2094.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2084.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2068.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2067.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2059.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2019.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1994.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1965.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1938.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1929.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1925.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1895.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1887.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1880.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1876.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1869.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1864.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1857.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1838.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1827.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1824.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1810.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1809.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1808.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1802.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1799.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1796.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1794.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1791.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1790.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1762.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1760.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1757.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1753.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1752.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1740.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1698.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1695.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1693.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1685.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1678.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1673.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1665.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1646.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1642.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1632.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1627.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1623.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1586.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1579.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1577.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1562.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1560.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1542.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1541.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1541.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1537.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1536.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1533.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1532.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1528.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1526.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1514.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1506.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1501.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1490.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1482.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1477.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1472.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1469.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1467.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1466.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1443.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1437.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1433.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1427.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1410.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1407.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1405.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1404.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1397.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1393.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1393.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1391.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1385.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1383.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1365.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1359.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1350.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1349.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1342.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1338.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1337.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1336.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1336.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1331.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1326.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1314.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1311.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1297.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1290.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1290.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1288.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1276.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1274.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1264.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1255.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1243.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1241.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1241.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1228.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1217.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1213.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1190.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1185.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1183.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1180.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1173.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1172.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1167.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1163.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1156.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1154.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1153.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1152.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1146.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1146.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1123.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1120.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1117.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1107.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1097.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1083.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1077.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1076.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1075.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1060.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1058.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1057.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1045.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1041.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1027.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1017.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1008.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1007.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 987.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 977.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 955.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 946.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 936.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 932.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 930.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 904.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 900.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 867.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 845.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 840.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 814.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 713.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 32.3
FF:10151-102I7 76 years, female 32.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.7
Pig sample Sample description nTPM
Amygdala
nTPM: 183.7
Samples: 4

Max nTPM: 219.8
Min nTPM: 112.3
Sample A Female 219.8
Sample B Female 203.9
Sample C Male 198.7
Sample D Male 112.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

846.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 846.7
Samples: 4

Max nTPM: 920.5
Min nTPM: 771.9
Sample A Male 771.9
Sample B Male 920.5
Sample C Female 865.5
Sample D Female 828.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.2
75934920 Antisense, RP_060530_01_E12, Mouse strain C57BL/6J (56 days, male) 9.7
69012729 Antisense, RP_050309_01_D03, Mouse strain C57BL/6J (56 days, male) 0.7

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