On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1408.5
nTPM
HPA Brain:
463.7
nTPM
GTEx:
1408.5
nTPM
FANTOM5:
29.8
Scaled Tags Per Million
Mouse:
471.4
nTPM
Pig:
212.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
463.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 405.1
2666
Male, age 74, left hemisphere
454.4
2411
Female, age 72, unknown
447.6
1870
Female, age 42, unknown
421.2
1833
Male, age 53, unknown
414.8
2828
Female, age 72, unknown
410.3
2219
Male, age 76, both hemispheres
400.3
1830
Male, age 51, unknown
394.3
1827
Male, age 72, unknown
390.7
2586
Male, age 75, left hemisphere
381.8
2019
Male, age 18, unknown
336.1
Dorsal raphe nucleus nTPM: 391.9
2750
Male, age 76, both hemispheres
446.3
2298
Female, age 72, unknown
418.9
2016
Female, age 72, unknown
379.2
1828
Male, age 53, unknown
373.8
2047
Male, age 72, unknown
341.0
Inferior colliculus nTPM: 384.2
2849
Male, age 72, unknown
417.8
1890
Male, age 53, unknown
406.8
1848
Female, age 42, unknown
366.7
2097
Female, age 72, unknown
345.5
Median raphe nucleus nTPM: 393.5
2220
Male, age 76, midline
393.5
Periaquaductal grey, anterior nTPM: 385.9
2502
Female, age 75, unknown
431.1
1795
Male, age 51, unknown
372.5
1947
Male, age 18, unknown
354.2
Periaquaductal grey, dorsal nTPM: 395.8
2850
Male, age 76, both hemispheres
420.3
1840
Male, age 53, unknown
409.1
2464
Female, age 72, unknown
386.7
1831
Male, age 72, unknown
367.1
Periaquaductal grey, lateral nTPM: 377.1
2053
Male, age 18, unknown
421.7
2140
Male, age 76, both hemispheres
366.5
2272
Male, age 74, both hemispheres
343.1
Pretectal area nTPM: 372.2
1817
Female, age 42, unknown
438.3
2316
Male, age 76, right hemisphere
417.0
1815
Male, age 53, unknown
416.5
2007
Male, age 72, unknown
400.9
2224
Female, age 72, unknown
387.0
2825
Male, age 18, unknown
381.8
1944
Female, age 72, unknown
372.7
1816
Male, age 51, unknown
355.0
2407
Male, age 75, both hemispheres
311.5
2667
Female, age 75, unknown
310.1
2273
Male, age 74, both hemispheres
303.8
Red nucleus nTPM: 424.3
2503
Female, age 72, unknown
502.2
1821
Female, age 72, unknown
465.4
1865
Male, age 51, unknown
457.9
2725
Female, age 75, unknown
444.8
2588
Male, age 74, left hemisphere
428.7
1904
Male, age 53, unknown
427.6
2769
Male, age 72, unknown
417.8
2584
Male, age 75, left hemisphere
415.1
2227
Male, age 72, unknown
409.0
2823
Male, age 76, right hemisphere
384.0
2785
Male, age 18, unknown
383.8
1954
Female, age 42, unknown
354.7
Substantia nigra nTPM: 463.7
2699
Male, age 18, unknown
639.7
2409
Female, age 72, unknown
577.9
1851
Male, age 51, unknown
566.0
2665
Male, age 74, both hemispheres
501.6
1916
Female, age 42, unknown
453.4
2241
Male, age 72, unknown
429.2
1889
Female, age 72, unknown
400.6
2590
Female, age 75, unknown
397.3
1941
Male, age 53, unknown
359.8
2583
Male, age 75, right hemisphere
311.8
Superior colliculus nTPM: 413.3
1913
Female, age 42, unknown
489.3
2587
Male, age 74, left hemisphere
488.1
1995
Male, age 72, unknown
485.0
2668
Female, age 75, unknown
470.7
1796
Male, age 53, unknown
412.1
1839
Male, age 51, unknown
384.4
1895
Male, age 76, right hemisphere
368.4
2261
Male, age 18, unknown
358.5
2087
Female, age 72, unknown
345.9
2664
Male, age 75, both hemispheres
330.8
Ventral tegmental area nTPM: 455.0
2410
Female, age 72, unknown
517.1
2223
Female, age 72, unknown
497.9
1915
Female, age 42, unknown
469.0
2021
Male, age 53, unknown
458.2
2218
Male, age 76, both hemispheres
396.6
1942
Male, age 51, unknown
391.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1408.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1408.5
Samples: 183
Max nTPM: 3549.4
Min nTPM: 463.2
Std nTPM: 510.1
Median nTPM: 1322.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3549.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3259.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3143.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2801.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2584.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2574.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2527.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2355.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2312.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2286.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2263.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2211.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2140.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2132.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2120.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2098.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2095.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
2083.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2079.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2039.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
2005.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2004.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1983.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1981.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1977.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1968.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1953.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1951.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1947.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1928.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1881.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1877.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1855.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1851.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1846.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1810.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1800.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1795.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1758.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1752.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1727.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1712.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1695.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1683.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1675.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1675.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1660.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1658.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1653.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1648.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1636.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1631.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1620.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1596.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1589.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1569.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1565.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1560.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1554.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1542.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1541.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1528.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1524.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1514.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1514.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1510.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1508.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1506.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1505.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1505.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1501.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1496.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1494.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1460.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1445.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1430.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1430.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1428.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1420.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1405.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1402.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1394.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1388.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1383.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1368.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1365.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1362.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1356.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1354.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1345.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1338.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1322.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1304.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1293.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1281.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1279.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1276.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1275.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1274.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1267.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1260.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1242.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1235.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1226.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1225.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1220.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1212.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1202.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1196.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1181.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1171.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1168.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1166.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1160.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1147.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1142.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1134.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1127.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1126.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1123.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1109.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1096.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1094.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1091.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1090.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1090.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1084.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1082.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1080.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1079.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1068.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1067.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1067.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1065.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1064.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1063.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1051.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1037.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1013.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1007.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1002.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1001.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
999.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
996.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
988.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
984.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
967.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
957.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
949.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
948.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
947.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
940.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
938.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
932.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
920.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
919.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
919.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
899.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
898.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
898.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
889.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
886.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
885.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
879.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
875.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
871.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
863.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
852.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
847.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
844.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
843.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
838.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
837.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
834.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
787.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
769.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
727.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
690.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
669.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
666.9
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
650.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
628.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
463.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
212.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 212.8
Samples: 3
Max nTPM: 258.3
Min nTPM: 179.6
Sample A
Female
258.3
Sample B
Female
200.6
Sample C
Male
179.6
Midbrain nTPM: 175.4
Samples: 3
Max nTPM: 207.6
Min nTPM: 139.3
Sample B
Female
207.6
Sample C
Male
179.4
Sample D
Male
139.3
Periaqueductal gray nTPM: 155.7
Samples: 3
Max nTPM: 169.3
Min nTPM: 135.6
Sample B
Female
169.3
Sample C
Male
162.1
Sample D
Male
135.6
Superior colliculi nTPM: 202.2
Samples: 4
Max nTPM: 241.1
Min nTPM: 160.4
Sample A
Female
241.1
Sample B
Female
211.7
Sample C
Male
195.6
Sample D
Male
160.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
471.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 471.4
Samples: 4
Max nTPM: 509.8
Min nTPM: 437.2
Sample A
509.8
Sample B
473.9
Sample C
437.2
Sample D
464.8
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The Human Protein Atlas project is funded
